Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c09
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical pr...   114   7e-26
Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical pr...    95   6e-20
AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical...    31   0.79 
L23646-10|AAA28037.2|  242|Caenorhabditis elegans Hypothetical p...    28   5.5  
U23484-6|AAK93845.1|  641|Caenorhabditis elegans Pink (pten-indu...    27   9.7  
AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical
           protein C50F7.4 protein.
          Length = 415

 Score =  114 bits (274), Expect = 7e-26
 Identities = 52/98 (53%), Positives = 73/98 (74%)
 Frame = -1

Query: 696 IITLNGGXPANFLDLGGGVGQSQVSAALKILESDPKVKTIFVNVFGGIVNCATIANGIVS 517
           +I L+GG PANFLD+GG V +  V  A++I+ SDP+VK + +N+FGGIVNCATIANG+VS
Sbjct: 303 LIKLHGGEPANFLDVGGAVTEDAVFNAVRIITSDPRVKCVLINIFGGIVNCATIANGVVS 362

Query: 516 ACRENPPKHPLVIRLEGTNSGEARKILEQSGLPVKIIN 403
           A  +     P+V+RLEGTN   A++I+++SGL +   N
Sbjct: 363 AVNKIGLNVPMVVRLEGTNVDAAKQIMKKSGLKILTAN 400


>Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical
           protein F47B10.1 protein.
          Length = 435

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 47/95 (49%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
 Frame = -1

Query: 696 IITLNGGXPANFLDLGGGVGQSQVSAALKILESDP-KVKTIFVNVFGGIVNCATIANGIV 520
           II L+GG PANFLD+GGG    QV+ A KI+ +D  KV  I VN+FGGI+ C  IA GI+
Sbjct: 305 IIKLHGGEPANFLDVGGGATVEQVTEAFKIITADKDKVSAILVNIFGGIMRCDVIAQGII 364

Query: 519 SACRENPPKHPLVIRLEGTNSGEARKILEQSGLPV 415
            A RE   K P+V+RL+GT   +A+ ++  S L +
Sbjct: 365 QAARELDLKIPIVVRLQGTKVEDAKALIATSQLRI 399


>AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical
           protein Y57A10A.16 protein.
          Length = 185

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 609 ILESDPKVKT-IFVNVFGGIVNCATIANGIVSACREN 502
           ++E DP V T I V    G++NCA  A GIV A  E+
Sbjct: 112 LIEKDPMVNTYISVPRDKGVLNCAAFAAGIVEAILES 148


>L23646-10|AAA28037.2|  242|Caenorhabditis elegans Hypothetical
           protein F44E2.8 protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 176 DTQFSLRKRLVY*STILSLNVNTSLKYP-MVIIESLEENP 292
           DT F+      Y ST +  +VN SLKYP  V++++++  P
Sbjct: 177 DTYFAAGANAKYTSTWVDRHVNQSLKYPENVVVDNVQYLP 216


>U23484-6|AAK93845.1|  641|Caenorhabditis elegans Pink (pten-induced
           kinase) homologprotein 1 protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 549 NCATIANGIVSACRENPPKHPLVIRLE 469
           N A + NG +   R  P KHP V+R++
Sbjct: 227 NAAKLLNGQMGTFRPLPAKHPNVVRIQ 253


>AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical
           protein Y69E1A.6 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 307 IQLTKGIFLKTFYNYHGVF 251
           I +TK  FL TFY+ HG F
Sbjct: 9   IDVTKPTFLLTFYSIHGTF 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,341
Number of Sequences: 27780
Number of extensions: 273922
Number of successful extensions: 543
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)