Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c08
         (172 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    93   3e-20
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    93   3e-20
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    28   1.0  
AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    25   5.4  
Z81113-7|CAI79236.1|  351|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine re...    25   7.2  
Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 41/50 (82%), Positives = 45/50 (90%)
 Frame = -1

Query: 151 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 2
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLK
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLK 50


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 41/50 (82%), Positives = 45/50 (90%)
 Frame = -1

Query: 151 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 2
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLK
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLK 50


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +2

Query: 2   LELCPSPVTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFALNNKR 136
           L++ P P++PLSV++N      PY    PL  GS     FGQ AL + R
Sbjct: 4   LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNR 45


>AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.8 protein.
          Length = 165

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 124 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 5
           K+K+ K +++   +P   +  TGNT   N ++RH R+ ++
Sbjct: 68  KKKVVKSVEKTARMPD--KPETGNTATGNPEKRHKRKKRV 105


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 17  SPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCH 172
           S   PLSVIS+S S   P+   + +++ ++     +   + +G + E  SC+
Sbjct: 19  SQYEPLSVISSSWSMWSPWSFCSNNLMIRVRACSTVRGYKCLGHNKEFQSCN 70


>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 14  PSPVTPLSVISNSVSCAHPYPLRNGSVLF 100
           P+P+ P+SV  +S S + P PL    ++F
Sbjct: 314 PTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 14  PSPVTPLSVISNSVSCAHPYPLRNGSVLF 100
           P+P+ P+SV  +S S + P PL    ++F
Sbjct: 316 PTPLPPISVEISSPSLSTPSPLTAAPIIF 344


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 14  PSPVTPLSVISNSVSCAHPYPLRNGSVLF 100
           P+P+ P+SV  +S S + P PL    ++F
Sbjct: 314 PTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 136 TFIIKRKLAKKLKQ--NRPIPQWVRMRTGNTIRYNAKRRHWRR 14
           T +I+R    KLK+  +R I Q  +    N +    KRR W+R
Sbjct: 400 TILIERGKMPKLKKIRDRYIKQKKKFNKENRLSKECKRRKWQR 442


>Z81113-7|CAI79236.1|  351|Caenorhabditis elegans Hypothetical
           protein T03F6.7 protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = -1

Query: 100 KQNRP---IPQWVRMRTGNTIRYNAKRRHWRR 14
           K NRP   IP W+ + +G  I +     HW +
Sbjct: 149 KYNRPVSAIPHWLDVISGENIYFMLMSDHWEK 180


>AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine
           receptor, class t protein26 protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 81  GMGLFCFSFLANLRLIIN 134
           G+GL+C S L N+ L++N
Sbjct: 95  GLGLWCCSCLLNILLLVN 112


>Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.6 protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 45  RIVFPVRILTH*GMGLFCFSFLANLRL 125
           +++FP +++    +G+FCFSF   + +
Sbjct: 127 KLIFPDKVIYVIIIGVFCFSFFFTVNI 153


>Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical
           protein T28B11.1 protein.
          Length = 573

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
 Frame = +2

Query: 14  PSPVTPLSVISNSVSCAHPY--------PLRNGSVLFQLFGQFALNNKRLMGRHFEQSSC 169
           P PVT L+ +S+    A P         PLR  S   +       NN R +GR      C
Sbjct: 489 PIPVTTLTPVSSLSRLARPQSAASVLSTPLRKISSSLKPVSPIPTNNSRQLGRPLSHDPC 548

Query: 170 H 172
           +
Sbjct: 549 N 549


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 139 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 5
           + FI++++L KKL++     +  R R    +RY  K+   R+  L
Sbjct: 718 RRFIMRKRLKKKLRKRYRGAKRRRKRQKYRLRYRKKKYQLRKGAL 762


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,926,971
Number of Sequences: 27780
Number of extensions: 60809
Number of successful extensions: 183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)