Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c07
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    29   0.74 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    28   1.3  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   1.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   1.7  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   4.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.2  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   5.2  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   6.9  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.1  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   9.1  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   9.1  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    25   9.1  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 433 KFITDVKNIFYSFIKNVYMFFFFNSILVSI 522
           KFI D +N F+  I   Y F  F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 428 SSNSLQTLKTFFIHLLKTYTCFFFLIP 508
           SS    +L  +F+ L++ + CFFF+ P
Sbjct: 50  SSGPFISLSFWFLSLVRGFVCFFFMFP 76


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 409 QTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGC 531
           ++ + N   ++TD +NIF +F+ N   + F  + L  I  C
Sbjct: 71  KSSESNSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 201  IGEIIHLSKPDKNKNKNITIHTLKFLSNHL 290
            +G I HL K D+N  K   ++TL F+ N L
Sbjct: 1251 LGFIHHLKKKDQNMEKVPVLYTLDFIWNTL 1280


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 388 FFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSI 522
           +F   +++T K     FI   KNIF  F     +FF F  IL SI
Sbjct: 84  WFPRNKIRTAKYTPIDFIP--KNIFLQFQNVANLFFLFLVILQSI 126


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 165 KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTL 269
           K DG+      S GE++H  + ++ KN+ + I+ L
Sbjct: 301 KLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNL 335


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +1

Query: 370 ITTEPIFFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGCVQL*SL 549
           + T+ I+F   +  T  +   + +  +++ F S ++N+  FF       S G C+    L
Sbjct: 22  VITQLIYFLTSKKITN-LGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFL 80

Query: 550 F 552
           F
Sbjct: 81  F 81


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 153 KSF*KH---DGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLVKKTKI 308
           KSF KH   D  L  ++ S+ ++    KP KN N +   HTL    + L++ +K+
Sbjct: 223 KSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTL-LSQDQLIELSKL 276


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 419 KLISSNSLQTLKTFFIHLLKTY 484
           KL+SSN+LQ +  F+  ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 92  FNAVLMRLRSAYNLVHTH 39
           +  ++  LRS YNL HTH
Sbjct: 730 YRQLVQELRSLYNLQHTH 747


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -1

Query: 167 LLKTFVSNKYHNVFFFYVMQVEACFFNAVLMRLRSAYNLVHTH 39
           L   F+   +   F F+++     F++  L   +  YN++H H
Sbjct: 123 LAYNFIVPAFQYFFAFFIIDSWQYFWHRYLHYNKKLYNMIHAH 165


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 396 CKKYW-FCCNQTIQ*IKLDIS**FTTQTVFLFWFFLPSGC*GTLMYELLCFYFYF 235
           C++ W     + +  +K +    F     + +WF   +   GT M ++   YFYF
Sbjct: 76  CRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTEMAQITTPYFYF 130


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 349 FYLLNCLITTEPIFFAFQRLQTQKINIFKF 438
           FYLL+  I T P+F       T  I+I K+
Sbjct: 46  FYLLHVRINTSPLFIKTTTRPTALIHITKY 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,183
Number of Sequences: 5004
Number of extensions: 51017
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)