Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c07
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711...    28   5.4  
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    28   7.1  
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    27   9.4  

>03_05_0328 -
           23170019-23170168,23170865-23170903,23171043-23171141,
           23171214-23171342,23171915-23172061,23172959-23173089,
           23173938-23174157,23174294-23174387,23174469-23174581,
           23174727-23174861,23175231-23175335,23175440-23175544,
           23176240-23176327,23176415-23176536,23176611-23176670,
           23177434-23177529,23177620-23177772,23177865-23177951,
           23179179-23179246,23179603-23179726,23180235-23180330,
           23180430-23180539,23180647-23180761,23181622-23181699,
           23181843-23181908,23182203-23182363,23182781-23183099
          Length = 1069

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 461 KMFLTSVMNLKILIFCVCSLWN 396
           K  + SV+ L +L +C+C  WN
Sbjct: 87  KSIMKSVIQLFLLFYCICMAWN 108


>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 179 VSIVLLKTFVSNKYHNVFFFYVMQVEACFFNAVLMRLRSAYNLVHTHMV 33
           + IV LK+ +SN+  +  FF  +       + +LM+LR    +V T  +
Sbjct: 291 LEIVYLKSNISNRSGDAIFFTKLMSAGTVADHILMKLRGILMVVSTESI 339


>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
            32412430-32413478,32414690-32416371,32416477-32416586,
            32417634-32418430,32418839-32418951,32419147-32419194,
            32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +3

Query: 117  IKKKNIVILVTYKSF*KHDGNLSYTLISIGEIIHLSKPDK--NKNKNITIHTLKFL 278
            +++ +IV+ V+YK       NLS+TL++I  II     DK  +K+ N  + T++ +
Sbjct: 1130 VERMDIVLEVSYKVLLMGKSNLSWTLLAI-HIIGSMCGDKFLSKSSNFLMTTIRLV 1184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,237
Number of Sequences: 37544
Number of extensions: 245339
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)