Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c07
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine re...    28   6.4  
AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical pr...    27   8.5  
CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical...    27   8.5  
AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical...    27   8.5  
AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical
           protein F55A11.7 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/75 (30%), Positives = 34/75 (45%)
 Frame = -1

Query: 314 YFYFGFFYQVVAKEL*CMNCYVFIFIFVRLTQMYNLTNTNQCVR*VSIVLLKTFVSNKYH 135
           YF +G F     +      CYVF+F FV LT M+ +      +   ++      +S    
Sbjct: 215 YFKYGSFVDFCRRYYIQHLCYVFLFAFV-LT-MFGIAFHGSLIFHETVEFATIVLSVL-- 270

Query: 134 NVFFFYVMQVEACFF 90
             FFF+V+ V AC F
Sbjct: 271 -AFFFFVLFVGACIF 284


>AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein3 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = -3

Query: 456 VFNVCNEFEDINFLCL---QP-LECKKYWFCC 373
           VFNV   F +INFLCL   +P L  K Y+  C
Sbjct: 19  VFNVLGLFGNINFLCLTYIKPALRSKSYYIQC 50


>AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical
           protein Y76B12C.1 protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 397 FQRLQTQKINIFKFITD-VKNIFYSFIKNVYMFFFFNSILVSIG 525
           FQ+ QT    I   +TD  + ++Y ++     FF++ + ++SIG
Sbjct: 198 FQQRQTGFTQIKDILTDKCRKLYYFYVTENSTFFYYWTAIISIG 241


>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -1

Query: 236 FVRLTQMYNLTNTNQCVR*VSIVLLKTFVSNKYHNVFFFYVMQVEACFFNAVLMRL 69
           F+ +   +  + T+QC     +VLL T + +  H+  FF+V+    C  +A+ M L
Sbjct: 189 FLTILSSFGYSLTSQC-----LVLLLTSLFHSSHDHLFFFVLLASFCVPSALRMGL 239


>Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical
           protein K09E9.1 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +1

Query: 349 FYLLNCLITTEPIFFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGG 528
           + + N +I TE       RL    +N +     V  +  S+  N Y +   ++I   +G 
Sbjct: 185 YMVTNFVILTEAFELPKSRLLVVSLNGWSVSMAVTALAASYTLNWYAY---HTIFAIVGA 241

Query: 529 CVQL*SLFTC 558
           C+ + SL TC
Sbjct: 242 CIAIISLATC 251


>CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical
           protein C50E10.11 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 437 NLKILIFCVCSLWNAKNIGSVVIK 366
           NL ILIF V   W+A  IG + IK
Sbjct: 58  NLNILIFIVIFSWSASAIGRLFIK 81


>AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical
           protein Y75B8A.34 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 452 LTSVMNLKILIFCVCSLW 399
           + S++NL I +FCVC +W
Sbjct: 53  VVSLINLVIQLFCVCFIW 70


>AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical
           protein D2063.2 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -2

Query: 313 ISILVF--FTKWLLR--NFNV*IVMFLFLFLSGLL 221
           ++I++F  F KW L+  N N+ +++  F  LSG+L
Sbjct: 315 LAIIIFETFEKWYLQLANLNICVLIIAFFMLSGML 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,171
Number of Sequences: 27780
Number of extensions: 280287
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)