Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14c06
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 80 2e-15
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 67 1e-11
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 60 2e-09
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 58 4e-09
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 56 3e-08
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 46 3e-05
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 39 0.004
04_04_0667 + 27097741-27098085,27098203-27098547 33 0.19
02_05_0134 + 26161904-26162776 33 0.19
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425... 31 1.0
04_01_0412 + 5469200-5469395,5469554-5469672 30 1.3
10_06_0180 + 11526139-11526172,11526365-11527218 29 2.4
03_01_0630 + 4635297-4636220 29 4.1
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 28 7.2
03_02_0974 - 12833836-12834246 27 9.5
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 27 9.5
01_06_0127 - 26718452-26718989,26719082-26720211 27 9.5
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 27 9.5
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 79.8 bits (188), Expect = 2e-15
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Frame = -1
Query: 624 KGTSTRAGFLNEGRIGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQ----- 460
KG L+ R+ +AA IGL Q C+D +PY +R+QFG+ I EFQ I Q
Sbjct: 258 KGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQVQHFVNR 317
Query: 459 ---------------IAHLQTQLEAARLLTYNAARLKEHGHEFVKEAAMAKYFASEIAQT 325
+A + T L+++R Y+ AR ++G K+ A FA+E A
Sbjct: 318 RLVPTITSYLLMQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQ 377
Query: 324 LTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIYEGTSNMQLQTIAKLLERE 172
+ + I +GG G+ ++P + RDAK+ I GTS ++ I + L +E
Sbjct: 378 VALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKE 428
>07_03_1669 + 28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 66.9 bits (156), Expect = 1e-11
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 2/149 (1%)
Frame = -1
Query: 624 KGTSTRAGFLNEGRIGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQ 445
+G G L GR+ ++IG + M+ + L R FGKKI + +A +
Sbjct: 643 RGFEIAQGRLGPGRLHHCMRLIGAAERGMNLMVERALSRTTFGKKIAQHGSFLADLAKCR 702
Query: 444 TQLEAARLLTYNAA-RLKEHGHEFVKE-AAMAKYFASEIAQTLTSKCIDFMGGVGFTRDF 271
+LE ARLL AA +L HG++ + AMAK A +A + + GG G + D
Sbjct: 703 VELEQARLLVLEAADQLDRHGNKKARGILAMAKVAAPNMALKVLDMAMQVHGGAGLSSDT 762
Query: 270 PQEKFYRDAKIGTIYEGTSNMQLQTIAKL 184
+ A+ I +G + L TIAKL
Sbjct: 763 VLSHLWATARTLRIADGPDEVHLGTIAKL 791
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 59.7 bits (138), Expect = 2e-09
Identities = 37/123 (30%), Positives = 59/123 (47%)
Frame = -1
Query: 585 RIGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNA 406
R+ +A Q IG+ G D Y ERKQFG + FQ ++ + ++A L+ +
Sbjct: 283 RVMVAWQPIGISMGVFDVCHRYLKERKQFGVPLVAFQLNQEKLVRMLGNIQAMLLVGWRL 342
Query: 405 ARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIY 226
+L E G A++ K + S +A+ + S + +GG G DF K + D + Y
Sbjct: 343 CKLYESGKMTPGHASLGKGWTSRMAREVVSLGRELLGGNGILADFLVAKAFCDLEPIYSY 402
Query: 225 EGT 217
EGT
Sbjct: 403 EGT 405
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 58.4 bits (135), Expect = 4e-09
Identities = 38/123 (30%), Positives = 59/123 (47%)
Frame = -1
Query: 585 RIGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNA 406
RI +A Q IG+ G D Y ERKQFG + FQ ++ + ++A L+ +
Sbjct: 260 RIMVAWQPIGISMGVFDMCHRYLKERKQFGVPLAAFQLNQEKLVRMLGNIQAMLLVGWRL 319
Query: 405 ARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIY 226
+L E G A++ K + S+ A+ + S + +GG G DF K + D + Y
Sbjct: 320 CKLYESGKMTPGHASLGKAWTSKKAREVVSLGRELLGGNGILADFLVAKAFCDLEPIFSY 379
Query: 225 EGT 217
EGT
Sbjct: 380 EGT 382
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/125 (26%), Positives = 60/125 (48%)
Frame = -1
Query: 561 IGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNAARLKEHGH 382
IG+ G DA + Y ERKQFG + FQ ++ + ++A LL + +L + G
Sbjct: 201 IGIAAGVYDACLRYLGERKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGR 260
Query: 381 EFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIYEGTSNMQL 202
+A++ K + ++ A+ + + +GG G DF K + D + YEG+ + +
Sbjct: 261 MTTGQASLGKAWITKQARETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNV 320
Query: 201 QTIAK 187
A+
Sbjct: 321 LVAAR 325
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 46.0 bits (104), Expect = 3e-05
Identities = 36/137 (26%), Positives = 61/137 (44%)
Frame = -1
Query: 597 LNEGRIGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQTQLEAARLL 418
L+ R+ +A IG+ G DA + Y ERKQFG + FQ Q + LL
Sbjct: 312 LSFSRVIVAWISIGIAAGVYDACLRYLGERKQFGAPLAAFQ---------LNQEKLMWLL 362
Query: 417 TYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDAKI 238
+ L + G +A++ K + ++ A+ + + +GG G DF K + D +
Sbjct: 363 GWRLYELHDSGRMTTGQASLGKAWITKKARETVALGRELLGGNGIVTDFHVGKAFCDMES 422
Query: 237 GTIYEGTSNMQLQTIAK 187
YEG+ + +A+
Sbjct: 423 LYTYEGSYEVNALIVAR 439
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 38.7 bits (86), Expect = 0.004
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 16/175 (9%)
Frame = -1
Query: 639 LENMAKGTSTRAGFLNEGRIGIAAQMIGLCQGCMDATIPYTLERKQFG--KK----IYEF 478
L + K + G L GR+GIA +G+ + + + Y L R+QFG KK + ++
Sbjct: 329 LPTINKRFAATLGELVGGRVGIAYSSVGILKVSVTIAVRYALLRQQFGPPKKPEISVLDY 388
Query: 477 QGISYQIAHLQTQLE----AARLLTYNAARLKEHGHE------FVKEAAMAKYFASEIAQ 328
Q +++ + A R L + +K+ E V + + Y S A+
Sbjct: 389 QSHQHKLMPMLASSYAFHFATRYLVDKYSEMKKTNDEDVMADVHVLSSGLKAYITSYTAK 448
Query: 327 TLTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIYEGTSNMQLQTIAKLLEREYTQ 163
++ S C + GG G+ D I +EG + + LQ +A L ++Y +
Sbjct: 449 SI-SVCRESCGGHGYAAVNRFGALRNDHDIFQTFEGDNTVLLQQVAGDLLKQYQE 502
>04_04_0667 + 27097741-27098085,27098203-27098547
Length = 229
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -3
Query: 604 WFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKED--LRVSGHQLPNR 455
WF +R+ W + + L + D+LH+R E++++E L V H+L R
Sbjct: 71 WFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRER 122
>02_05_0134 + 26161904-26162776
Length = 290
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 604 WFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKEDLRVS 476
WF +R+ W + + L + D+LH R E++R+E L ++
Sbjct: 109 WFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALA 151
>03_01_0575 +
4247431-4247489,4248475-4248547,4248792-4249229,
4252122-4253339
Length = 595
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -3
Query: 625 KGYKYAGWFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKEDLRVSGHQLPNRTPA 446
+ + A + LE ++G+DDRS +Y D + +I ++ + V GH L +T
Sbjct: 375 RDFHRAKYQLEHIVRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHAL--KTNI 432
Query: 445 DTVG 434
T+G
Sbjct: 433 TTLG 436
>04_01_0412 + 5469200-5469395,5469554-5469672
Length = 104
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 281 VKPTPPIKSMHFEVNVCAISEAKYLAIAASLTNSWPCSFSLAALYVRRRAASNCVC 448
+KP P S E C+ + A L+ TN WP + + RR S C+C
Sbjct: 6 IKPPPEASSKSREEAACSEASATGLSRRVPNTNGWP---RVKGKHPHRRCLSACLC 58
>10_06_0180 + 11526139-11526172,11526365-11527218
Length = 295
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 610 AGWFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKE 491
A WF RR+ W +R + L R+D+L + +R++
Sbjct: 97 AVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRD 136
>03_01_0630 + 4635297-4636220
Length = 307
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 610 AGWFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKE 491
A WF RR+ W +R + L R+D+L + +R++
Sbjct: 84 AVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRD 123
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 102 CLYALKLRKINHKSFGAKALIVCIPFLIIWQ 194
CLY + ++H+ FG+K + +P + +W+
Sbjct: 410 CLYIWAILYLDHRDFGSKNVPKDVPRIAVWK 440
>03_02_0974 - 12833836-12834246
Length = 136
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 332 AISEAKYLAIAASLTNSWPCSFSLAALYVRRRAA 433
A + A+Y++ AA + NS PCS A+ Y R A
Sbjct: 86 AAAAAQYISYAALMRNSVPCSIPGASYYNCRPGA 119
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 489 SSFRIVSFLVCKESLRPYSPDTDRSSEPR 575
S RI F VC ES+R Y P D E R
Sbjct: 164 SRVRIGRFPVCPESMREYIPCLDNEEEIR 192
>01_06_0127 - 26718452-26718989,26719082-26720211
Length = 555
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 510 RKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNAARLKEHGHEFVKEAAMAKY 349
R F ++ QG+ A L + + ++ LTYN A + H+ ++ A Y
Sbjct: 167 RGAFIAAVFAMQGVGIIFAGLVSMIVSSIFLTYNKAPSYKGNHDLSRQMPAADY 220
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 27.5 bits (58), Expect = 9.5
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = -1
Query: 639 LENMAKGTSTRAGFLNEGRIGIAAQMIGLCQGCMDATI---PYTLERKQFGKKIYEFQGI 469
LE G + + LN R A IG+C C+ TI PY L++ G + Y +G
Sbjct: 686 LEEHIVGENKKGKILNMERE--AQYRIGICTRCIILTIPMDPYALQQTLLGLE-YLHKGC 742
Query: 468 SYQIAHLQTQLEAARLLTYNAARLKEHG 385
+ I H + L T A++ + G
Sbjct: 743 NPPIIHRDVKATNILLNTRLEAKIADFG 770
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,209,212
Number of Sequences: 37544
Number of extensions: 343061
Number of successful extensions: 907
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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