Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c06
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.62 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.62 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.8  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   7.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 506 NNSERRF-TSFRASATKSHTCRHSWKPP 426
           NN++  F  +    AT ++T R  WKPP
Sbjct: 115 NNADGNFEVTLATKATLNYTGRVEWKPP 142


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 485  TSFRASATKSHTCRHSWKPP 426
            TS R      HT + +WKPP
Sbjct: 981  TSIRVDDLDQHTLKVTWKPP 1000



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 11   HLDNKSRVICPMYLFKIKHRK 73
            HL+  S   CPM  F ++H+K
Sbjct: 1480 HLNAWSDGGCPMIYFVVEHKK 1500


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 320 VNVCAISEAKYLAI 361
           +N+CAIS  +YLA+
Sbjct: 154 LNLCAISLDRYLAV 167


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 236 VQFTRVPATCSYKRLPNY*KGNTHNKRFCSK*LMIYFP 123
           +Q   V A C  ++L    +GN +N+ F +   ++ FP
Sbjct: 48  IQSDNVFANCELQKLRLLLQGNINNQLFQTPCELLNFP 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,965
Number of Sequences: 438
Number of extensions: 4146
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)