Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c04
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   5.0  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   5.0  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   8.7  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 201 KYQITDTRVISKCTSKL*RKSNRTHNRPTLRQAIGNVINV 82
           +YQ T T+  +K T K+  KS  ++  PTL+  I   I +
Sbjct: 342 RYQKTKTKTRAKSTWKIANKSVYSNLAPTLKNTIHAQIKI 381


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 347 IRVR*SFFFIA*MGG*AYSSRGIKWLLEPIDIYNVNAPP 463
           +R+R  FF I   G   Y++ G+ W+ +   IY+VN  P
Sbjct: 132 VRIRFWFFLIFYYG--IYNAVGLLWITKLFHIYSVNWCP 168


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 355 YSYVKCITNQHNIFSFRKYFTFFNALVSFKSLAT*LKYRS 236
           Y YV   T   +I   R+YF+F N + SF ++   +KY S
Sbjct: 153 YPYVLGPTCDSDIDLIREYFSFENGVCSFDNMT--VKYVS 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,164
Number of Sequences: 5004
Number of extensions: 46106
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)