Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c04
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1164 - 30863063-30863095,30863308-30864777                       29   2.2  
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    29   3.8  
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358...    28   6.7  

>03_05_1164 - 30863063-30863095,30863308-30864777
          Length = 500

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 511 HTLQTETHYCFWAEISRVVVPTRADSLKRSYH 606
           H   T T + FWA++++ V+  R   L  SYH
Sbjct: 253 HVKFTSTSHAFWADLTKGVLCCRCSDLFDSYH 284


>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 255 VAKLLN--ETKALKKVKYFR---KLNILC*FVIHFT*EYADLFFLLLRWVDELTAHVVLS 419
           VA+L+   ETK L  +KY     K ++L  F   F   +    FL+ RW+DE  A  +++
Sbjct: 17  VARLMRNKETKELVAMKYIPRGLKASLLRFFFFFFLSLFVRSVFLIDRWIDENVAREIIN 76


>12_01_0456 +
           3587244-3587440,3587595-3587766,3587877-3587999,
           3588165-3588338,3588537-3588647,3588737-3588870,
           3588945-3589038,3589122-3589220,3590494-3590630,
           3590709-3590803,3590922-3591045,3591122-3591209,
           3592867-3593043,3593130-3593167,3593398-3593485,
           3594101-3594209,3594374-3594443,3594520-3594667,
           3595069-3595197,3595292-3595417,3595596-3595658,
           3595952-3596197
          Length = 913

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 316 IYYV--DSLYILHKSTLIFFFYCLDGWMS 396
           +YYV  D+L+  HK + IF   CL+G +S
Sbjct: 496 LYYVNRDTLFSYHKESEIFLQVCLEGQIS 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,747
Number of Sequences: 37544
Number of extensions: 267018
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)