Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c04
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    29   3.4  
U64598-6|AAL65778.1|   75|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   7.9  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   7.9  

>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 391 STHLSNKKKRSAYSYVKCITNQHNIFSFRKYFTFFNALVSFKSLA 257
           ST    + + S + YVKC TN   +F+      F+N+   +K LA
Sbjct: 131 STKGIRRIEHSYHGYVKCETNHFGVFALLPDRLFYNSESFWKDLA 175


>U64598-6|AAL65778.1|   75|Caenorhabditis elegans Hypothetical
           protein C52B9.10 protein.
          Length = 75

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 488 DLRTYISRRVVHLRCKCLWAPVTT*YHVSCKLIHPSKQ*KKKISVLLCKMYNEST 324
           +L   I++ V+  +CKC W    +  HV+C  I      +   +V L ++ NES+
Sbjct: 7   ELLERIAQMVIVAKCKCAWQRSKSMTHVNCLRIDTWIVDELIEAVALARIDNESS 61


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 528 NALLFLGRNKQGGGTYPCG 584
           +A L  GRNK+ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 528 NALLFLGRNKQGGGTYPCG 584
           +A L  GRNK+ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,016,900
Number of Sequences: 27780
Number of extensions: 252858
Number of successful extensions: 464
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)