Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c04
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.33 
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.1  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 579 TGRYHHPAYFCPKTVMRFGLKGVAAIVTILRP 484
           +G Y  PA+  P +  R+ L  VA + T + P
Sbjct: 438 SGEYEIPAHGLPPSATRYDLGAVATVGTTVAP 469


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 568 PPPCLFLPKNSNAFRFEGCGSHCNYTETLEL 476
           P P   L KN + + F        YT+T ++
Sbjct: 33  PRPSFELSKNGDEWTFTSSSGDNTYTKTFKM 63


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 568 PPPCLFLPKNSNAFRFEGCGSHCNYTETLEL 476
           P P   L KN + + F        YT+T ++
Sbjct: 35  PRPSFELSKNGDEWTFTSSSGDNTYTKTFKM 65


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 567 GTYPCGLXQEVLPP 608
           GTYP  L Q  LPP
Sbjct: 478 GTYPTLLPQWCLPP 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,585
Number of Sequences: 438
Number of extensions: 3554
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)