Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b24
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical ...    65   4e-11
Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical ...    29   2.0  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z75530-4|CAA99794.2|  357|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical
           protein W04B5.4 protein.
          Length = 197

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
 Frame = -2

Query: 414 SKLFRVERIKSSKHFPYWQKRILDEL--KIHEETRVTVVKNIPEINAKLWKIKHLIKITP 241
           SKL+     + +   P W K+ ++ L     +  R+ V +N   IN +LWKIKHLI++ P
Sbjct: 57  SKLWMAWLYRDTSAEPKWTKKHVENLFGADFKVGRMEVFRNTELINTELWKIKHLIELRP 116

Query: 240 IEFPYG-EPTADDINYTILKENGQCLV 163
           +EF  G EPT DDI  T L  NGQC V
Sbjct: 117 VEFKNGVEPTEDDIFSTSLAPNGQCEV 143


>Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical
           protein T07C4.9b protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 504 GYKHPGGIRYPGGITYYPRFPDY 436
           GY   GG  YPGG   YP+ P Y
Sbjct: 62  GYPGQGGAPYPGGSGGYPQAPQY 84


>Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.9a protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 504 GYKHPGGIRYPGGITYYPRFPDY 436
           GY   GG  YPGG   YP+ P Y
Sbjct: 104 GYPGQGGAPYPGGSGGYPQAPQY 126


>AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical
           protein M01D7.1 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 277 FSIDFWYIFNHSDSGLLMNFQFIQYPFLP-VWKMFA*FNSLY 399
           FS+DFW  +    S     F  I+Y  LP +WK    FN L+
Sbjct: 132 FSLDFWIEWFCKSSADKKIFPIIKYTKLPKLWKFLNIFNELF 173


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -2

Query: 504 GYKHPGGIRYPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPY--WQKRILDELKI 331
           GY  PG +R P G    P  P    P   P   F     +  +H  Y  WQ++   + + 
Sbjct: 735 GYGPPGAMRPPAGFAPPPGAPYGYPPGAPPPAGFHPSHPQHPQHAQYLAWQQQRYHQQQQ 794

Query: 330 HEE 322
           H++
Sbjct: 795 HQQ 797


>Z75530-4|CAA99794.2|  357|Caenorhabditis elegans Hypothetical
           protein C47E8.6 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 396 ERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYGEP 217
           E++++     Y    +   +K  +ET++  +K   EI  +   +KH+ +I  IE    E 
Sbjct: 217 EKLEAQSDLKYAIVHLEQRMKEEQETQMQAMKEEREIEIEEIGLKHMEQIRTIESGNSEQ 276

Query: 216 TA 211
           TA
Sbjct: 277 TA 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,907
Number of Sequences: 27780
Number of extensions: 335849
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)