Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b24
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.7  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   9.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -1

Query: 595 TILLLTIYHQ*NERKITTKF*STGFYHSIKRL*TSRRYSLP 473
           T+++L ++ +  +  +   +    F H + RL   RRY+ P
Sbjct: 321 TVVVLNVHFRSPQTHVMAPWVRRVFIHVLPRLLVMRRYNTP 361


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 468 PQGNEYLLDVYN 503
           P+GNEY+L + N
Sbjct: 375 PEGNEYMLALSN 386


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 471 GGITYYPRFPDYKDPEIT 418
           GG T YP   D    EIT
Sbjct: 76  GGTTMYPGIADRMQKEIT 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,122
Number of Sequences: 438
Number of extensions: 4689
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)