Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b19
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.89 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.3  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   6.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 489 CVIRLAKGRVWIVKSIIRTSVGGF 560
           C+ R A GR W VK++     G F
Sbjct: 498 CIFRTANGRGWGVKTMKTIKKGSF 521


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 359 YVQYEYTCPTTSVFN 315
           Y+  + TC T+S+FN
Sbjct: 262 YIAMDVTCSTSSIFN 276


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 420 RHYGHYLSNLLLLCAGLKRNIRTIR 346
           R +G YLS+ +L+C  + R    I+
Sbjct: 118 RMFGLYLSSFVLVCISMDRYYAVIK 142


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 79  FSGIYNLIKYS 47
           FSGI+NL+K S
Sbjct: 299 FSGIFNLVKIS 309


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 625 AMYPSSVQTVVFAV 666
           A+YPSSVQ +   V
Sbjct: 221 ALYPSSVQVIALGV 234


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 79 FSGIYNLIKYS 47
          FSGI+NL+K S
Sbjct: 49 FSGIFNLVKIS 59


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +3

Query: 537 IRTSVGGFCECTIYSYAFDVTGTIRGARIGDVPVFGTNGSICGRHIA 677
           +R  V  FC+   + +  D    +    +G + +FG + +  GR I+
Sbjct: 284 LRMGVASFCKAFPWHFVVDRQLELVQLGVGFMRIFGHHLNRLGREIS 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,625
Number of Sequences: 438
Number of extensions: 3940
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)