Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14b18
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 111 4e-25
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 109 2e-24
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 105 2e-23
12_01_0899 - 8689125-8689383,8689540-8689826 29 2.0
09_04_0201 + 15543318-15543488,15543956-15544069 29 2.6
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 29 2.6
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095... 29 2.6
04_01_0053 + 551027-553024 28 3.5
09_02_0445 + 9446171-9447496 28 4.6
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 28 4.6
04_04_1576 - 34551095-34552645 27 6.0
10_01_0318 + 3493913-3496976,3497064-3497392 27 8.0
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 27 8.0
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 111 bits (266), Expect = 4e-25
Identities = 52/101 (51%), Positives = 67/101 (66%)
Frame = -1
Query: 314 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 135
RLY + GYKR NQ+ENT+L+++EG + + +Y GK YVY+AK ++ GG
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66
Query: 134 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 12
T R IWGKVTRPHGNSG VRAKFKSNLP +MG ++
Sbjct: 67 ----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKV 103
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 109 bits (261), Expect = 2e-24
Identities = 51/109 (46%), Positives = 70/109 (64%)
Frame = -1
Query: 338 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 159
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 158 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 12
++ + +R IWGKVTRPHGNSG VRAKF+SNLP +MG ++
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKV 102
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 105 bits (251), Expect = 2e-23
Identities = 50/105 (47%), Positives = 67/105 (63%)
Frame = -1
Query: 338 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 159
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 158 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 24
++ + +R IWGKVTRPHGNSG VRAKF+SNLP +M
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 1 ASLAILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 144
A+ +L P + A R + AR LPE PC R+ LP+ + LP PP
Sbjct: 14 AAARLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 85 GRVTLPQIARSLVFLPRGPPGIGVLFL 165
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 120 GFFATGTSGNWCPLLSSVHIDAMLA 194
GFFA G+WC LL+ ++I + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195
>04_03_0827 -
20108937-20109046,20109146-20109234,20109400-20109548,
20109801-20109942,20110530-20110645,20111141-20111458
Length = 307
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 127 LPRGPPGIGVLFLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPR 279
+P+ PPG LA + Q L R+FA T A SC +RR R
Sbjct: 87 VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCVMRRIR 137
>04_01_0053 + 551027-553024
Length = 665
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +3
Query: 78 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 167
A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>09_02_0445 + 9446171-9447496
Length = 441
Score = 27.9 bits (59), Expect = 4.6
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = +3
Query: 63 DTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLASIKDCIITVFCS--FN 236
+T W GH P + F++G G W S ++ + + + CS +
Sbjct: 220 ETPYCGYWHGHGTPPRPRAYVFSSGVDGGWRESDSGSDVELPSLELINFVGRAGCSLYWG 279
Query: 237 LEESGVLVLVA*TTLISCEYGLCVQPAVAG 326
L+ ++ + TT E+ L PA+ G
Sbjct: 280 LDGKDAMLALHKTT---AEFSLVTIPAIVG 306
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 27.9 bits (59), Expect = 4.6
Identities = 23/93 (24%), Positives = 35/93 (37%)
Frame = -2
Query: 298 PYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRGHQFPEVPVAKKP 119
P S +S R LSS ++ + M S M + S+C+ G++ +A P
Sbjct: 385 PSSLGLSPSVNGVNRGILSSSVEVLSSAMTTSAMQSRSPSLCSACLDGYERERADMASSP 444
Query: 118 SCVLSGAR*PAHMATLAVSEPSSSLTSLPRLWD 20
C A L + PSS+ R D
Sbjct: 445 GCGALHATEQPMSQWLQIGTPSSARPPFDRAQD 477
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 167 LCTHRRNACQHKRLHHYGLLLL 232
LC H AC RLH +GL LL
Sbjct: 77 LCNHLLIACFKSRLHRHGLRLL 98
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 16 LCPIAWAGRLDLNLARTLPELPCGRVTLPQIARSLVFLPRGPPGIGVLFLALYT 177
LC + +G + LA LPEL ++ ++ + P PP G+++L+LY+
Sbjct: 184 LCVNSLSGAIPPELAAALPELTYLDLSSNNLSGPM---PEFPPRCGLVYLSLYS 234
>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
Length = 530
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 205 TASLRSFAPSTLRRAVFSCWLRRPRLYPVNTAFAYSLPWRGFDAL 339
T +L S+ P + R F+ W+R V +++PW G L
Sbjct: 153 TVTLTSYFPES-ERDTFAGWIRAVAAKGVRDLTLHNIPWSGLHVL 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,582
Number of Sequences: 37544
Number of extensions: 298905
Number of successful extensions: 815
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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