Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14b17
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical ... 128 5e-30
AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical ... 128 5e-30
Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical pr... 126 1e-29
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 29 2.4
U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid tran... 29 4.1
Z70782-11|CAA94848.1| 487|Caenorhabditis elegans Hypothetical p... 27 9.5
Z70781-9|CAA94837.1| 487|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1b protein.
Length = 389
Score = 128 bits (308), Expect = 5e-30
Identities = 54/81 (66%), Positives = 69/81 (85%), Gaps = 2/81 (2%)
Frame = -3
Query: 566 KVFDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLA--NENIASMWVKITSSW 393
+V+DNE + VAYS+SFFH MFALA+LYVMMTLT+W+ P++ L+ N N+AS+WVKI SSW
Sbjct: 309 RVYDNEEEGVAYSYSFFHFMFALASLYVMMTLTSWYKPSNDLSHLNSNMASVWVKIVSSW 368
Query: 392 MCIGLYIWTLVAPAIFPDREF 330
+C+ LY WTLVAP I+PDREF
Sbjct: 369 VCVALYCWTLVAPIIYPDREF 389
>AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1a protein.
Length = 459
Score = 128 bits (308), Expect = 5e-30
Identities = 54/81 (66%), Positives = 69/81 (85%), Gaps = 2/81 (2%)
Frame = -3
Query: 566 KVFDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLA--NENIASMWVKITSSW 393
+V+DNE + VAYS+SFFH MFALA+LYVMMTLT+W+ P++ L+ N N+AS+WVKI SSW
Sbjct: 379 RVYDNEEEGVAYSYSFFHFMFALASLYVMMTLTSWYKPSNDLSHLNSNMASVWVKIVSSW 438
Query: 392 MCIGLYIWTLVAPAIFPDREF 330
+C+ LY WTLVAP I+PDREF
Sbjct: 439 VCVALYCWTLVAPIIYPDREF 459
>Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical
protein R11H6.2 protein.
Length = 442
Score = 126 bits (305), Expect = 1e-29
Identities = 56/81 (69%), Positives = 68/81 (83%), Gaps = 2/81 (2%)
Frame = -3
Query: 566 KVFDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLA--NENIASMWVKITSSW 393
K +DNE + VAYS+SFFH MF LA+LYVMMTLT+W++P+S LA N N+AS+WVK+ SSW
Sbjct: 362 KAWDNEEEGVAYSYSFFHFMFCLASLYVMMTLTSWYHPDSDLAHLNSNMASVWVKMFSSW 421
Query: 392 MCIGLYIWTLVAPAIFPDREF 330
+C GLY WTLVAP IFPDREF
Sbjct: 422 ICGGLYAWTLVAPIIFPDREF 442
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
protein C48B4.4c protein.
Length = 1704
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 507 HYMEEAPRVGDGVSFVVEHLRLV 575
HYM+EA R+GD V F++ H +LV
Sbjct: 735 HYMDEAERLGDWV-FIMSHGKLV 756
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
protein C48B4.4b protein.
Length = 1691
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 507 HYMEEAPRVGDGVSFVVEHLRLV 575
HYM+EA R+GD V F++ H +LV
Sbjct: 722 HYMDEAERLGDWV-FIMSHGKLV 743
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
protein C48B4.4a protein.
Length = 1689
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 507 HYMEEAPRVGDGVSFVVEHLRLV 575
HYM+EA R+GD V F++ H +LV
Sbjct: 722 HYMDEAERLGDWV-FIMSHGKLV 743
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 507 HYMEEAPRVGDGVSFVVEHLRLV 575
HYM+EA R+GD V F++ H +LV
Sbjct: 735 HYMDEAERLGDWV-FIMSHGKLV 756
>U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid
transporter protein 8 protein.
Length = 483
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 491 LYVMMTLTNWFNPNSQLANENIASMWVKITSSWMCIGLYIWTLV 360
L + +TLTN F+ N A I SM KI ++ + IG+ + ++
Sbjct: 141 LLLFLTLTNMFSLNKFAARVQIISMCSKIFATLIIIGIGFFFII 184
>Z70782-11|CAA94848.1| 487|Caenorhabditis elegans Hypothetical
protein F57A8.7 protein.
Length = 487
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 240 VIYHLIIYTVL*ILHRSQLISSYTLLLY-CH 151
++Y LII+T L + R ++ +S LLL+ CH
Sbjct: 294 ILYVLIIFTKLSTIVRDKIFNSLVLLLFVCH 324
>Z70781-9|CAA94837.1| 487|Caenorhabditis elegans Hypothetical
protein F57A8.7 protein.
Length = 487
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 240 VIYHLIIYTVL*ILHRSQLISSYTLLLY-CH 151
++Y LII+T L + R ++ +S LLL+ CH
Sbjct: 294 ILYVLIIFTKLSTIVRDKIFNSLVLLLFVCH 324
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,152
Number of Sequences: 27780
Number of extensions: 287566
Number of successful extensions: 828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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