Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14b14
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 122 5e-29
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 27 1.6
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 27 2.1
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.1
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 27 2.1
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 2.7
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 6.3
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 25 8.4
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 25 8.4
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 122 bits (293), Expect = 5e-29
Identities = 67/182 (36%), Positives = 109/182 (59%), Gaps = 9/182 (4%)
Frame = -1
Query: 597 AGAQKNIGTSGVALVIVREDLLNQA---------LPTCPSLLDWTANYKQNSILNTPPMF 445
AGAQKN G +G+ +V VR+ +L + +P P++ D+ +S+ NT P+
Sbjct: 211 AGAQKNAGPAGITVVFVRDSVLARPTPAELHKLNIPVSPTVSDYKIMADNHSLYNTLPVA 270
Query: 444 AIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFR 265
++ + L+++ +GGL + + +K+ L+Y+T+++ + Y + V RS+MNV FR
Sbjct: 271 TLHAINLGLEYMLEHGGLVALEASSIEKSKLLYDTLDKHD-LYISVVEPAARSRMNVTFR 329
Query: 264 IGCPGDDALEKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKK 85
I LE EFL AE L+QLKG+R VGGIRAS+YNA+++E+ + L+ +E F K
Sbjct: 330 IE---PQELESEFLAEAEKHHLVQLKGYRSVGGIRASLYNAISVEQTRRLIDLLESFAKA 386
Query: 84 HS 79
HS
Sbjct: 387 HS 388
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 207 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 293
K ++P+RI LR +H+ Q + FY E
Sbjct: 117 KLRYPNRITILRGNHESRQITQVYGFYDE 145
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 135 LEEVQALVQYMEEFYKKHSK*ILLNLYKQYILFVCYLEFVVLY 7
LE++ + E+F+K+ S+ +LNL++ Y F F+ L+
Sbjct: 405 LEQLSYHFRICEKFFKESSENKMLNLFEDYNEFGLCKSFICLF 447
>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 147 NAVTLEEVQALVQYMEEFYKKHSK*ILLNLYKQYILFVCYLEFVV 13
+AV E+++ Y E F K +L+ Y+L C++EF V
Sbjct: 9 HAVPREQIRRRYSYFEAFEKNCHIQGILSKRALYMLIPCFMEFAV 53
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 207 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 293
K ++P RI LR +H+ Q + FY E
Sbjct: 104 KIRYPQRITILRGNHESRQITQVYGFYDE 132
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 171 GGIRASIYNAVTLEEVQALVQYMEEFYKKHSK*ILLN 61
G I A++ N+VTL + E++YK H LLN
Sbjct: 443 GSIEATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLN 479
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 125 FKLSFSTWRSSIKNIPSKYC*IYTSNIYFLYVIWNL-LFY 9
F SF TW+S+ +++P K + YF ++ N +FY
Sbjct: 155 FPHSFPTWKSAFRDVPDKDWAKTCLDWYFRFINCNWPIFY 194
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 207 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 293
K ++P RI LR +H+ + FY E
Sbjct: 98 KLRYPKRITLLRGNHESRGITQTYGFYSE 126
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 501 LDWTANYKQNSILNTPPMFAIYIMG 427
LDW K+NS + PP+ + G
Sbjct: 313 LDWRLQVKRNSNMQVPPVITEIVSG 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,825
Number of Sequences: 5004
Number of extensions: 54656
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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