Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14b14
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0398 + 3092577-3093857 167 4e-42
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378... 33 0.17
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 32 0.40
05_01_0493 + 4113869-4116728,4116859-4117370 31 0.53
10_01_0316 + 3479574-3482679,3482766-3483127 30 1.2
12_01_0197 + 1456296-1456668,1456930-1458746 30 1.6
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 30 1.6
06_03_0675 - 23428948-23431389 30 1.6
01_01_0490 + 3620523-3623403,3623524-3623996 30 1.6
06_01_0461 - 3280874-3281757,3281777-3282343,3282398-3283249,328... 29 2.8
04_04_1420 + 33441260-33443704 29 3.7
04_04_1419 - 33433463-33436009 29 3.7
01_06_0199 - 27467548-27469992 29 3.7
12_02_0629 - 21360831-21361310,21361391-21361663,21362212-213624... 28 4.9
06_01_0465 - 3304417-3306834 28 4.9
08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724 28 6.5
02_02_0035 - 6253446-6255473 28 6.5
12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346... 27 8.6
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 27 8.6
08_01_0045 + 322679-323347 27 8.6
03_06_0366 + 33408671-33408745,33409342-33409398,33410398-334104... 27 8.6
01_05_0180 + 18980059-18980165,18980280-18980378,18982007-189820... 27 8.6
>03_01_0398 + 3092577-3093857
Length = 426
Score = 167 bits (407), Expect = 4e-42
Identities = 82/172 (47%), Positives = 113/172 (65%)
Frame = -1
Query: 597 AGAQKNIGTSGVALVIVREDLLNQALPTCPSLLDWTANYKQNSILNTPPMFAIYIMGRVL 418
AGAQKN+G SGV + IVR+DL+ A P P +LD+ + S+ NTPP FAIYI G V
Sbjct: 256 AGAQKNVGPSGVTIAIVRKDLVGSAQPITPVMLDYKTHADNASLYNTPPCFAIYICGLVF 315
Query: 417 QWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDAL 238
+ + GGL + + KA ++Y+ I+ S G+Y PV K+VRS MNVPF + GD
Sbjct: 316 EDLLAQGGLAEVEKKNAHKAGILYDAIDASGGYYICPVEKSVRSLMNVPFTLAKGGD--F 373
Query: 237 EKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKH 82
EK+F+ A G++QLKGHR VGG+RASIYNA+ L V+ LV +M++F ++
Sbjct: 374 EKQFIAEAAKEGMVQLKGHRSVGGVRASIYNAMPLAGVEKLVAFMKDFQARN 425
>02_01_0522 +
3779404-3779439,3779594-3779709,3780120-3780327,
3781446-3781611,3781713-3781842,3782496-3782619,
3782794-3782844,3783140-3783262,3783504-3783602,
3783680-3783790,3783868-3783957,3784035-3784175,
3787913-3788116,3788154-3788290,3788429-3788662,
3789535-3789829,3789963-3790017,3790144-3790245,
3790581-3790669,3790807-3790899
Length = 867
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 561 ALVIVREDLLNQA-LPTCPSLLDWTANYKQNSILNTPPMFAIYIM 430
A+++ R ++L++ L CP L++W ++N + +T PM AI ++
Sbjct: 245 AIIVSRPEMLSKMYLEACPKLIEWFREREEN-VKSTEPMLAILLL 288
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 403 EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 311
EWR R N+++G + L YL H ++W + C
Sbjct: 613 EWRQRFNIAVGVAKGLAYLHHE-CLEWVIHC 642
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 430 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN 338
G++ T EW +R +++G E LTYL H+
Sbjct: 869 GATTTAAVVEWEVRLAIAVGVAEGLTYLHHD 899
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 409 SKEWRIRRNVSIGNKESLTYLQHN 338
S +W +R +++G ESL+YL H+
Sbjct: 957 SLDWNVRHQIALGVAESLSYLHHD 980
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = -3
Query: 442 HLYNGS--SITMDSK---EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 311
++ NGS ++ +SK +W+ R N+++G + L YL H ++W + C
Sbjct: 517 YVENGSLANVLFNSKILLDWKQRFNIALGVAKGLAYLHHE-CLEWVIHC 564
>11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = -3
Query: 442 HLYNGS--SITMDSK---EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 311
++ NGS ++ +SK +W+ R N+++G + L YL H ++W + C
Sbjct: 922 YVENGSLANVLFNSKILLDWKQRFNIALGVAKGLAYLHHE-CLEWVIHC 969
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 430 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 311
GS + EW+ R +++G + L YL H ++W + C
Sbjct: 604 GSEASQTLLEWKQRFKIALGVAKGLAYLHHE-CLEWVIHC 642
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 430 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN 338
G++I EW +R ++++G E L YL H+
Sbjct: 876 GAAIGAAVVEWEVRLSIAVGVAEGLAYLHHD 906
>06_01_0461 -
3280874-3281757,3281777-3282343,3282398-3283249,
3284503-3284644
Length = 814
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 403 EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 311
+W R N++IG + L YL H ++W + C
Sbjct: 630 KWNQRYNIAIGVAKGLAYLHHE-CLEWIVHC 659
>04_04_1420 + 33441260-33443704
Length = 814
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 400 WRIRRNVSIGNKESLTYLQHN*AIKWFLLC 311
WR R +++G ++L YL H ++W + C
Sbjct: 618 WRSRYKIAVGVAKALAYLHHE-CLEWIVHC 646
>04_04_1419 - 33433463-33436009
Length = 848
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 400 WRIRRNVSIGNKESLTYLQHN*AIKWFLLC 311
WR R +++G ++L YL H ++W + C
Sbjct: 612 WRSRYKIAVGVAKALAYLHHE-CLEWIVHC 640
>01_06_0199 - 27467548-27469992
Length = 814
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -3
Query: 430 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 311
G ++ + W+ R +++G L YL H ++W + C
Sbjct: 611 GGGMSTTTLAWKDRYKIALGTARGLAYLHHE-CLEWVIHC 649
>12_02_0629 -
21360831-21361310,21361391-21361663,21362212-21362488,
21362590-21362735,21363207-21363416
Length = 461
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 306 VAKNVRSKMNVPFRIGCPGDDALEKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEE 127
+AK + + ++ P R+ PG+D + G + G + +K D G +A + LE
Sbjct: 264 IAKALSAPLDTPPRVFVPGEDEYKSGKENGYD-FGFLHIKAIDDAGHDKAVKLKVLGLEA 322
Query: 126 V-QALVQ 109
V +A+VQ
Sbjct: 323 VDRAIVQ 329
>06_01_0465 - 3304417-3306834
Length = 805
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 403 EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 311
+W R N+++G + L YL H ++W + C
Sbjct: 615 QWSQRYNIALGVAKGLAYLHHE-CLEWIVHC 644
>08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724
Length = 302
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 588 QKNIGTSGVALVIVREDLLNQALPTCPSLLD 496
+K GT+G+ I LL+Q P CP+ D
Sbjct: 62 KKEAGTAGLDSAIAISSLLSQGSPECPTFPD 92
>02_02_0035 - 6253446-6255473
Length = 675
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 231 EFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEEV 124
EFL + +L ++ LK + GGI +++N+ TL +
Sbjct: 240 EFLANSSSLQVLSLKQNNLTGGIPLALFNSSTLTTI 275
>12_02_0156 -
14532000-14532098,14532669-14534330,14534445-14534660,
14534730-14534907,14535065-14535276
Length = 788
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 92 IKNIPSKYC*IYTSNIYFLYVIWNLLF 12
+KN+PS YC + +YF V + L F
Sbjct: 134 VKNLPSPYCRYWAGFLYFAGVNFGLTF 160
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 147 YILRHEYRQRLCVLLAE*VPKSQHPSRILFLRHHHQGNQF*MAHSFYCE 293
Y+ R Y LL K ++P RI LR +H+ Q + FY E
Sbjct: 144 YVDRGYYSVETVTLLV--ALKVRYPQRITILRGNHESRQITQVYGFYDE 190
>08_01_0045 + 322679-323347
Length = 222
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 146 LYIEARIPPTSLCPFS*ISPKV---SAPFKNSFSKASSPGQPILNGTFILLRTFLATG 310
L+ R P S P S SP V S+P + SFS A G P N +L R ATG
Sbjct: 28 LFATTRHLPCSPSPSS--SPPVWLLSSPIRRSFSAADCSGSPWRNARVVLRRRH-ATG 82
>03_06_0366 +
33408671-33408745,33409342-33409398,33410398-33410481,
33410575-33410646,33410768-33410839,33411011-33411051,
33411517-33411583,33411673-33411864,33411947-33412036,
33412111-33412218,33412513-33412578
Length = 307
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 147 YILRHEYRQRLCVLLAE*VPKSQHPSRILFLRHHHQGNQF*MAHSFYCE 293
Y+ R Y LL K ++P RI LR +H+ Q + FY E
Sbjct: 84 YVDRGYYSVETVTLLV--ALKVRYPQRITILRGNHESRQITQVYGFYDE 130
>01_05_0180 +
18980059-18980165,18980280-18980378,18982007-18982069,
18982622-18982757,18983698-18983881,18984276-18984397,
18984477-18984617
Length = 283
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 342 TIEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDALEKEFLKGAETL 205
T G++ P+ K +R ++++ CP +DA K FL+ A L
Sbjct: 133 TCSHLTGWFCKPMIKTLRLQLSIRLFSLCPNEDA--KNFLRNAYEL 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,848,528
Number of Sequences: 37544
Number of extensions: 322749
Number of successful extensions: 709
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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