Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b14
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...   177   5e-45
Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    28   5.8  
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    27   7.7  
AL033514-29|CAA22090.1|  333|Caenorhabditis elegans Hypothetical...    27   7.7  
AB070573-1|BAB63947.1|  294|Caenorhabditis elegans Ser/Thr prote...    27   7.7  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score =  177 bits (431), Expect = 5e-45
 Identities = 85/173 (49%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
 Frame = -1

Query: 594 GAQKNIGTSGVALVIVREDLLNQALPTCPSLLDWTANYKQNSILNTPPMFAIYIMGRVLQ 415
           GAQKN+G +G+ +VIVR+DL+ +     PS+  +      NS+ NTPP   IY    VL+
Sbjct: 196 GAQKNLGAAGLTIVIVRKDLIGKQQAITPSVFSYKEMIANNSLYNTPPTGGIYTTNLVLK 255

Query: 414 WIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCP-GDDAL 238
           WI+  GGL+ + +L  +K+ +IY+ I+ SNGFY+  V K  RS MNV FRIG P G+D L
Sbjct: 256 WIKSKGGLQAIYELNLQKSGMIYDIIDNSNGFYHCAVDKRYRSIMNVCFRIGGPSGNDEL 315

Query: 237 EKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKHS 79
           E++FLKG+    +I LKGHR VGGIRAS+YNA+++EE Q L  +M EF K H+
Sbjct: 316 EEKFLKGSIERNMISLKGHRSVGGIRASLYNAISVEETQVLATWMNEFQKLHN 368


>Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -1

Query: 516 TC-PSLLDWTANYKQNSILNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNT 340
           TC P       + K    ++  PM+  +  G+ +  I  +G    + +   +K ++I   
Sbjct: 299 TCDPRTYKLATDNKTCERIDQSPMWLFFAHGQSVWNISTDGKSFQLQRAGLQKTAMIDID 358

Query: 339 IEQSNGFYYAPVAKNVRSKMNV 274
           +++ N  YYA +  NV  +MN+
Sbjct: 359 VKE-NRLYYADIGANVIERMNI 379


>Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -1

Query: 516 TC-PSLLDWTANYKQNSILNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNT 340
           TC P       + K    ++  PM+  +  G+ +  I  +G    + +   +K ++I   
Sbjct: 299 TCDPRTYKLATDNKTCERIDQSPMWLFFAHGQSVWNISTDGKSFQLQRAGLQKTAMIDID 358

Query: 339 IEQSNGFYYAPVAKNVRSKMNV 274
           +++ N  YYA +  NV  +MN+
Sbjct: 359 VKE-NRLYYADIGANVIERMNI 379


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 72  ILLNLYKQYILFVCYLEFVVLYC 4
           +L N+ K ++ F C+ EF   YC
Sbjct: 539 LLANMSKPHVAFACFKEFTYRYC 561


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 60  NLTIFTW-NVFYRTPPCTERELEPP 131
           N+T+FT+  V Y  PP ++R  +PP
Sbjct: 103 NITVFTFLGVPYAEPPTSQRRFKPP 127


>AL033514-29|CAA22090.1|  333|Caenorhabditis elegans Hypothetical
           protein Y75B8A.30 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 207 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 293
           K+++P R++ +R +H+  Q    + FY E
Sbjct: 126 KARYPDRMMLIRGNHESRQITQVYGFYDE 154


>AB070573-1|BAB63947.1|  294|Caenorhabditis elegans Ser/Thr protein
           phosphatase protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 207 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 293
           K+++P R++ +R +H+  Q    + FY E
Sbjct: 87  KARYPDRMMLIRGNHESRQITQVYGFYDE 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,940
Number of Sequences: 27780
Number of extensions: 300198
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)