Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b14
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   6.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 366 KKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 262
           ++ASL     + +  F +  + K  RS + +PF +
Sbjct: 232 RRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHL 266


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 366 KKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 262
           ++ASL     + +  F +  + K  RS + +PF +
Sbjct: 227 RRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHL 261


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 531 NQALPTCPSLLDWTANY 481
           NQ + TCP  + W  NY
Sbjct: 241 NQTI-TCPIKVSWRGNY 256


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 531 NQALPTCPSLLDWTANY 481
           NQ + TCP  + W  NY
Sbjct: 292 NQTI-TCPIKVSWRGNY 307


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 531 NQALPTCPSLLDWTANY 481
           NQ + TCP  + W  NY
Sbjct: 241 NQTI-TCPIKVSWRGNY 256


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 111 QYMEEFYKKHSK*ILLNLYKQYIL 40
           ++ ++FY++ +K  LLN Y ++ L
Sbjct: 43  RFSKDFYRQDTKNNLLNAYVRFKL 66


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +3

Query: 42  VYIACINLTIFTWNVFY 92
           VY+ C+ + + +W  F+
Sbjct: 251 VYVPCVLIVVLSWVSFW 267


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = -3

Query: 577 WYIWGSACHC 548
           WY+    CHC
Sbjct: 240 WYLPSGGCHC 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,846
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)