Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b13
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   5.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   5.6  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   9.8  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          25   9.8  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   9.8  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 341 DSWFAYSFDYARALMLSTQGFTVALFYC 258
           D W  Y+F  + AL   TQ   + LF+C
Sbjct: 713 DWWQKYNFTLSAALDTGTQLSVIILFFC 740


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 350  PSDDSWFAYSFDYARALMLSTQGFTVALFYCFMNTEVRHA---IRYHVE 213
            P +D W+  + +YA A+   T+    A+FY    TE   +   +R+H +
Sbjct: 1935 PDEDGWYEPNSEYAAAI---TKSNVHAVFYSCSTTEASVSTPEVRFHAD 1980


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 491 GKISSARVPPTRELCVSSPPDVRASIY 571
           G++ S  + P+R+ C+S+  D +  I+
Sbjct: 618 GRVYSVTINPSRQQCISAGTDAKIRIW 644


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 586 PAXARPSGPVDGMTLTKTSWTRPK 657
           P   R   P+ G T  KTS T PK
Sbjct: 233 PLHTRYQSPLKGQTYLKTSLTNPK 256


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 500 SSARVPPTRELCVSSPPDVRASIYT-SSLPQXAQ 598
           +S  + PT+   VSS P+V A + + SS P   Q
Sbjct: 91  ASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQ 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,936
Number of Sequences: 5004
Number of extensions: 55958
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)