Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b13
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0737 + 21087442-21088282,21088402-21088524,21088623-210887...    33   0.15 
06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674...    32   0.36 
08_01_0208 + 1662101-1662223,1663130-1663243,1663327-1663468,166...    29   3.3  
06_01_0001 - 18456-18521,18692-18874,19046-19153,19337-19396,197...    29   4.4  
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224...    28   5.8  
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836...    28   7.7  
07_01_0291 + 2113234-2113307,2113637-2113712,2113914-2114005,211...    28   7.7  

>07_03_0737 +
           21087442-21088282,21088402-21088524,21088623-21088744,
           21088784-21089027,21089430-21089670,21089746-21089899,
           21090179-21090214,21090215-21090520
          Length = 688

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
 Frame = -3

Query: 175 GGELHTLRT------GLLDPERRVYG--SRYEDIWNEYGIELIEFLTKRT*CIYGDKNVD 20
           GG  HT  T      G + PE  ++G  S   DI++ +G+ ++E +TKR  C YGD   D
Sbjct: 510 GGHTHTKTTRIVGTYGYMAPEYAIHGNVSPKIDIFS-FGVLVLEIVTKRKNCSYGDGTTD 568


>06_03_0732 +
           23965090-23965431,23965610-23965746,23967359-23967417,
           23968817-23970135
          Length = 618

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 347 SDDSWFAYSFDYARA--LMLSTQGFTVALFYCFMNTEVRH 234
           +D S F YSFD A A  LM+  +  T A FY  ++T+ RH
Sbjct: 144 ADSSGFTYSFDIANASKLMVGGERCTTAPFYKNIDTDHRH 183


>08_01_0208 +
           1662101-1662223,1663130-1663243,1663327-1663468,
           1663496-1663610,1663936-1664077,1664216-1664313,
           1664396-1664525,1664740-1664884,1665163-1665389
          Length = 411

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 507 AELIFPCQDYVGADYETPLGEHPRNRTIQEGY*SASCIDTIVG 379
           A +I    + +G+D E  LGE PR    + G  S +C D  +G
Sbjct: 240 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALG 282


>06_01_0001 -
           18456-18521,18692-18874,19046-19153,19337-19396,
           19755-19937,20109-20291,20816-20998,21170-21352,
           21524-21581,21878-21935,22586-22643,22938-22995,
           23292-23349,23998-24007
          Length = 482

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/86 (26%), Positives = 40/86 (46%)
 Frame = -2

Query: 473 VLITKLRSANTLETEQYRKATKALLVLIPLLGITNLLVLCGPSDDSWFAYSFDYARALML 294
           V+  K+ S   L+ +   K    +L  IP+L  T+L   CGPSD   FA +   +  +  
Sbjct: 345 VISRKISSVPPLQIQSL-KGESNVLCAIPIL-TTSLKTSCGPSDIRCFAETTAASWPMCR 402

Query: 293 STQGFTVALFYCFMNTEVRHAIRYHV 216
           + Q          ++T++ +AI  +V
Sbjct: 403 ARQPTLTTRLVDALDTDIVYAIHSNV 428


>02_01_0327 -
           2241228-2242509,2243227-2243247,2243299-2243614,
           2244232-2244496,2245887-2245985
          Length = 660

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 364 LCSADLVTTPGSRTHSTTREPSCYQHRDSQWPYSIAS 254
           LC++DL  TP S  H+    P    H+D  WP  +AS
Sbjct: 501 LCASDLTATPPSLRHTWRYRP---PHKD--WPAPVAS 532


>07_01_0991 -
           8358309-8358338,8359115-8359393,8359964-8360092,
           8360317-8360598,8361400-8361525,8363490-8363870
          Length = 408

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 190 SEEGEGGELHTLRTGLLDPERRVYG 116
           +EEG  G  H L +GLLD    ++G
Sbjct: 179 AEEGHAGAYHVLESGLLDDVSVIFG 203


>07_01_0291 +
           2113234-2113307,2113637-2113712,2113914-2114005,
           2114079-2114220,2114297-2114397,2114490-2114619,
           2114775-2114919,2115034-2115275
          Length = 333

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 507 AELIFPCQDYVGADYETPLGEHPRNRTIQEGY*SASCIDTIVG 379
           A +I    + +G+D E  LGE P+    + G  S +C D  +G
Sbjct: 157 AVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAALG 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,256
Number of Sequences: 37544
Number of extensions: 378435
Number of successful extensions: 1041
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)