Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14b13
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY314779-1|AAQ84886.1| 454|Caenorhabditis elegans secretin rece... 61 6e-10
AL031620-2|CAA20927.2| 454|Caenorhabditis elegans Hypothetical ... 61 6e-10
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 59 3e-09
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 59 3e-09
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 59 3e-09
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 59 3e-09
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 59 3e-09
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 59 3e-09
Z11126-7|CAO82061.1| 522|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z11126-6|CAA77471.2| 480|Caenorhabditis elegans Hypothetical pr... 42 4e-04
>AY314779-1|AAQ84886.1| 454|Caenorhabditis elegans secretin
receptor-like proteinSEB-3 protein.
Length = 454
Score = 61.3 bits (142), Expect = 6e-10
Identities = 29/91 (31%), Positives = 57/91 (62%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLLVLCGPSDDSWFAYSFDYARA 303
I+ +L+ KLR+ N+ E+++ + KA L+L+PLLGI+N+ + P S + A
Sbjct: 301 IVVILVQKLRTENSAESKKIWRTIKATLLLVPLLGISNIPLFYEPEHPS---SVYMLGSA 357
Query: 302 LMLSTQGFTVALFYCFMNTEVRHAIRYHVER 210
++ +QG +A+ YCF+N+E++ A++ + +
Sbjct: 358 ILQHSQGIFIAVLYCFLNSEIQGALKRQLSK 388
>AL031620-2|CAA20927.2| 454|Caenorhabditis elegans Hypothetical
protein C18B12.2 protein.
Length = 454
Score = 61.3 bits (142), Expect = 6e-10
Identities = 29/91 (31%), Positives = 57/91 (62%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLLVLCGPSDDSWFAYSFDYARA 303
I+ +L+ KLR+ N+ E+++ + KA L+L+PLLGI+N+ + P S + A
Sbjct: 301 IVVILVQKLRTENSAESKKIWRTIKATLLLVPLLGISNIPLFYEPEHPS---SVYMLGSA 357
Query: 302 LMLSTQGFTVALFYCFMNTEVRHAIRYHVER 210
++ +QG +A+ YCF+N+E++ A++ + +
Sbjct: 358 ILQHSQGIFIAVLYCFLNSEIQGALKRQLSK 388
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLL--VLCGPSDDSWFAYS-FDY 312
++ VL +K+R +N +K+ KA ++L+PLLG+ N++ + P+ D+ ++ + Y
Sbjct: 353 VIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAVWTY 412
Query: 311 ARALMLSTQGFTVALFYCFMNTEVRHAIRYHVERWK 204
+ QG VA YCF N EV H ++ R++
Sbjct: 413 TASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYR 448
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLL--VLCGPSDDSWFAYS-FDY 312
++ VL +K+R +N +K+ KA ++L+PLLG+ N++ + P+ D+ ++ + Y
Sbjct: 343 VIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAVWTY 402
Query: 311 ARALMLSTQGFTVALFYCFMNTEVRHAIRYHVERWK 204
+ QG VA YCF N EV H ++ R++
Sbjct: 403 TASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYR 438
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLL--VLCGPSDDSWFAYS-FDY 312
++ VL +K+R +N +K+ KA ++L+PLLG+ N++ + P+ D+ ++ + Y
Sbjct: 353 VIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAVWTY 412
Query: 311 ARALMLSTQGFTVALFYCFMNTEVRHAIRYHVERWK 204
+ QG VA YCF N EV H ++ R++
Sbjct: 413 TASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYR 448
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLL--VLCGPSDDSWFAYS-FDY 312
++ VL +K+R +N +K+ KA ++L+PLLG+ N++ + P+ D+ ++ + Y
Sbjct: 353 VIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAVWTY 412
Query: 311 ARALMLSTQGFTVALFYCFMNTEVRHAIRYHVERWK 204
+ QG VA YCF N EV H ++ R++
Sbjct: 413 TASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYR 448
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLL--VLCGPSDDSWFAYS-FDY 312
++ VL +K+R +N +K+ KA ++L+PLLG+ N++ + P+ D+ ++ + Y
Sbjct: 353 VIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAVWTY 412
Query: 311 ARALMLSTQGFTVALFYCFMNTEVRHAIRYHVERWK 204
+ QG VA YCF N EV H ++ R++
Sbjct: 413 TASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYR 448
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLL--VLCGPSDDSWFAYS-FDY 312
++ VL +K+R +N +K+ KA ++L+PLLG+ N++ + P+ D+ ++ + Y
Sbjct: 343 VIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAVWTY 402
Query: 311 ARALMLSTQGFTVALFYCFMNTEVRHAIRYHVERWK 204
+ QG VA YCF N EV H ++ R++
Sbjct: 403 TASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYR 438
>Z11126-7|CAO82061.1| 522|Caenorhabditis elegans Hypothetical
protein ZK643.3b protein.
Length = 522
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLLVLCGPSDDSWFAYSFDYARA 303
I+++L+ KLR LE QYRKA + L+LIP+ G+ LL + S ++++ +
Sbjct: 402 IVYILVKKLRCDPHLERIQYRKAVRGALMLIPVFGVQQLLTIYRFS-NTYYQVTDQSLNG 460
Query: 302 LMLSTQGFTVALFYCFMNTEV 240
L QG V+ C+ N V
Sbjct: 461 L----QGMFVSFIVCYTNRSV 477
>Z11126-6|CAA77471.2| 480|Caenorhabditis elegans Hypothetical
protein ZK643.3a protein.
Length = 480
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = -2
Query: 482 IMWVLITKLRSANTLETEQYRKATKALLVLIPLLGITNLLVL 357
I+++L+ KLR LE QYRKA + L+LIP+ G+ LL +
Sbjct: 402 IVYILVKKLRCDPHLERIQYRKAVRGALMLIPVFGVQQLLTI 443
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,463,583
Number of Sequences: 27780
Number of extensions: 314604
Number of successful extensions: 822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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