Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b10
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187...    29   3.2  
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845...    27   9.8  

>07_01_0251 +
           1874148-1874311,1874367-1874429,1874484-1874709,
           1874830-1875081,1875158-1875267,1875720-1875815,
           1875898-1875985,1876246-1876475,1876745-1876929,
           1877136-1877335,1877592-1877924,1878058-1878159,
           1878869-1879166,1879626-1879774,1879859-1880143,
           1880531-1880728
          Length = 992

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 271 YHLCTFLYYY*LQSRVLRLLSKFGFSIYV-FEFFFLH 164
           Y++C FLY++ L + V+ L+  FG  +Y+   +F +H
Sbjct: 857 YYVCVFLYFWVLSTPVVSLV--FGSYLYICINWFHIH 891


>03_03_0129 -
           14684003-14684123,14684205-14684323,14684406-14684501,
           14684605-14684712,14684974-14685060,14685135-14685338,
           14685429-14685488,14686096-14686264,14686400-14686473,
           14686586-14686897,14687054-14687212
          Length = 502

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 59  NNNISLYYFFTPTRPY 106
           NNN+SL++  TPT P+
Sbjct: 256 NNNVSLFFTETPTNPF 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,042,718
Number of Sequences: 37544
Number of extensions: 154564
Number of successful extensions: 202
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)