Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b09
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   5.6  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   7.4  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 420 VRLSHKLVSLLKFSIIANILTDKKVNITIIKSFDHTTTEDLNT 548
           ++ SH  V   KF       TDKK+N+   + F  T T D+ T
Sbjct: 470 IKSSHFSVPEFKFEPKTEATTDKKLNVPKFE-FKPTATADVQT 511


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 330 PLHSVYVPGFNLNIVQPLIKYNCCLTI*C*VRLSHKLVSLLKFSIIANIL----TDKKVN 497
           PL ++  PGF L   QP++K    L      R  H   +L+K+   A+ L     DK   
Sbjct: 416 PLQTLSCPGFTLTTQQPILK-RPTLRKELSSRALHTTATLMKYRANASSLRTTPIDKDGQ 474

Query: 498 ITIIKSFDHTTTE 536
           IT ++  + T+ +
Sbjct: 475 ITSLQQKNGTSNQ 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,108
Number of Sequences: 5004
Number of extensions: 33582
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)