Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b09
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-12|AAY86244.1|  231|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U64848-12|AAY86244.1|  231|Caenorhabditis elegans Hypothetical
           protein C50E3.14 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 139 CLTFKVSEAECGILLGARETCQ 204
           CLT KV+   C ++ G  +TCQ
Sbjct: 14  CLTMKVNSTACTVICGKFQTCQ 35


>Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 99  IVDNVIKLIHSYLINFTKHW 40
           + DN+ +L+H+ L+ F K+W
Sbjct: 94  VFDNLTQLVHTNLVKFHKYW 113


>AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 99  IVDNVIKLIHSYLINFTKHW 40
           + DN+ +L+H+ L+ F K+W
Sbjct: 94  VFDNLTQLVHTNLVKFHKYW 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,200,256
Number of Sequences: 27780
Number of extensions: 183548
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)