Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b08
         (130 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    27   2.4  
U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical ...    25   7.4  

>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 127 MSFCCLLCVVLWTTEYFVYRTNRNSN 50
           +S  CL+CVV +   +F+ R ++N +
Sbjct: 184 LSSTCLICVVCYIALWFIIRKHKNGS 209


>U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical
           protein C48B6.8 protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 115 CLLCVVLWTTEYFVYRTNRNS---N*FSYSDLFKYQYKTN 5
           C+   V++ TE+ +  TNR+S      S  ++F + + T+
Sbjct: 100 CIYSAVIYHTEWLIIMTNRSSPDETLASLDEIFSHSFSTS 139


>AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical
           protein C17E7.9a protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 130 AMSFCCLLCVVLWTTEYFVYRTNRNSN*FSYSDL 29
           A++FC + C  LW +E  V +   +S  F   +L
Sbjct: 212 AIAFCVMTCS-LWNSEILVLKKTEDSRQFGMQNL 244


>AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical
           protein C17E7.9b protein.
          Length = 257

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 130 AMSFCCLLCVVLWTTEYFVYRTNRNSN*FSYSDL 29
           A++FC + C  LW +E  V +   +S  F   +L
Sbjct: 184 AIAFCVMTCS-LWNSEILVLKKTEDSRQFGMQNL 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,528
Number of Sequences: 27780
Number of extensions: 22290
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 12,740,198
effective HSP length: 23
effective length of database: 12,101,258
effective search space used: 229923902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)