Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b07
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0223 + 21047240-21047304,21047577-21047706,21048783-210488...    37   0.018
06_02_0338 - 14723277-14723444,14724564-14724836,14735044-147351...    35   0.054
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    30   2.0  
03_05_0871 + 28396964-28399843                                         29   2.7  
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202...    29   2.7  
09_04_0529 + 18356964-18358307,18359829-18359944,18360036-183601...    29   4.7  
12_01_0541 + 4251931-4254141                                           28   6.2  
09_06_0313 + 22240971-22242176                                         28   8.3  

>02_04_0223 +
           21047240-21047304,21047577-21047706,21048783-21048871,
           21049592-21049647,21049721-21049776,21050163-21050202,
           21050505-21050629,21050715-21050808,21051401-21051480,
           21051598-21051640,21057539-21057630,21057746-21057919
          Length = 347

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -1

Query: 682 LPEHLXDKVEIVKGNVLEPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIID 512
           + E   DKV   KGN+LEPDS+ + +EG  AVV  +   +   P   +S G  ++++
Sbjct: 101 ISESWADKVIWNKGNLLEPDSLKDIMEGVSAVVPFIRLLDLKLPRGSMSTGLISMME 157


>06_02_0338 -
           14723277-14723444,14724564-14724836,14735044-14735160,
           14735276-14735593
          Length = 291

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
 Frame = -1

Query: 658 VEIVKGNVLE-PDSVHEAVEGTDAVVITLGTR---NDLAPTSDLSEGTKNIIDAMRAKNV 491
           +++V+ +V+E  D + +A+ G DAVV   G R   +  AP    + GT N+++A R   V
Sbjct: 104 LQLVRADVMEGTDKLVDAIRGADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGV 163

Query: 490 KTVSACLSAFLFYEQ---EKVPPIFVNLN------EDHKRMFQALKDSGLNWIAAFPPHF 338
            T    +S+ L       + + P +  LN          +  + ++ SG+N+    P   
Sbjct: 164 -TRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGL 222

Query: 337 TDDPSREMIIEVNPEKTPGR-TIAKCDLGTFLVDAL--SEPKYYKAV 206
           T+ P    I+ + PE T    +I++  +    V+AL   E   YK V
Sbjct: 223 TEQPPTGNIV-MEPEDTLYEGSISRQQVAEVAVEALLCREESSYKVV 268


>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 161 VISLIYPICRKVKRIFLHFFPCNFFYIRSNI 69
           +ISLI+  C   K+I LH  PC  F    N+
Sbjct: 658 MISLIFEECHNAKKISLHRLPCTGFQYLINL 688


>03_05_0871 + 28396964-28399843
          Length = 959

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 91  KLQGKKCKNILLTLRHIGYIKLITTIGSFIL 183
           KLQG+  +N+LL   H   IK IT  GS+I+
Sbjct: 815 KLQGRVHRNLLLEDPHFSCIKSITLSGSWIV 845


>02_05_0140 -
           26218828-26219759,26219885-26220002,26220089-26220278,
           26220380-26220514,26220617-26220714,26221697-26221866,
           26222586-26222961
          Length = 672

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 345 GGNAA--IQFKPLSFRAWNILLWSSFKLTKIGGTFSCS 452
           GGNA   +QF     +AW    +  F LT +G    CS
Sbjct: 240 GGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGMICS 277


>09_04_0529 +
           18356964-18358307,18359829-18359944,18360036-18360133,
           18360234-18360418
          Length = 580

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 552 GARSFLVPRVMTTASVPSTASCTESGSRTF 641
           GA   L+PR  TT++  + A   ESG+ TF
Sbjct: 320 GAGQRLIPRTTTTSASGACAGADESGNETF 349


>12_01_0541 + 4251931-4254141
          Length = 736

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +3

Query: 378 SFRAWNILLWSSFKLTKIGGTFSCS*NKNADKQADTVLTFFALIASIMFLVPS 536
           SFR   +++W+ F L    G  +CS +  AD+QA T+++    +  +M L+ S
Sbjct: 85  SFRNDMVVVWACFLLGCADGIAACSLD-GADQQARTMISQATQVFYVMLLLIS 136


>09_06_0313 + 22240971-22242176
          Length = 401

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = -3

Query: 266 VRPRHIPSGRAFRTQV---LQGSHWHLQCAQRMKEPIV 162
           +RP HIP   A R         +HWH  CA   + P V
Sbjct: 7   LRPAHIPRSTAVRPPCATPFSRAHWHATCAAIRRVPRV 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,837
Number of Sequences: 37544
Number of extensions: 410970
Number of successful extensions: 1019
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)