Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14b07
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 28 5.6
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 28 5.6
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 27 9.8
AY305844-1|AAR11988.1| 423|Caenorhabditis elegans nuclear recep... 27 9.8
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 27 9.8
AF273828-1|AAG15177.1| 422|Caenorhabditis elegans nuclear recep... 27 9.8
AF273827-1|AAG15176.1| 421|Caenorhabditis elegans nuclear recep... 27 9.8
AF273826-1|AAG15175.1| 419|Caenorhabditis elegans nuclear recep... 27 9.8
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 27 9.8
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 27 9.8
AC024771-7|AAK70663.4| 407|Caenorhabditis elegans Nuclear hormo... 27 9.8
>L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical
protein ZC21.9 protein.
Length = 262
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 246 RNVPRSHLAMVLPGVFSGFTSIIISRLGSSV-KCGGNA 356
R+ +HLA V+PGVF+ ++ I++L SS C N+
Sbjct: 13 RDQRHAHLAQVVPGVFTSLVALSIAQLTSSCPSCNTNS 50
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 573 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 671
P+ TT ++PST + TES S + + +T +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 573 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 671
P+ TT ++PST + TES S + + +T +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical
protein K09E2.1 protein.
Length = 915
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 570 VPRVMTTASVPSTASCTESGSRTFPLTISTLS 665
VP T+ +VPST T S SRT + +T S
Sbjct: 582 VPSTTTSVTVPSTQKATPSPSRTTKKSTTTTS 613
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 609 PSKEQTLSSSP*GLGTTWRRLRIYLKE 529
PSK T+ P G G T + +R+YL E
Sbjct: 1166 PSKTITIRKGPFGFGFTLKSVRVYLGE 1192
>AY305844-1|AAR11988.1| 423|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 423
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/46 (21%), Positives = 29/46 (63%)
Frame = -3
Query: 242 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 105
G++ + +V++ ++L+CA+R++EP + ++ + + ++R F
Sbjct: 350 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 395
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 609 PSKEQTLSSSP*GLGTTWRRLRIYLKE 529
PSK T+ P G G T + +R+YL E
Sbjct: 1166 PSKTITIRKGPFGFGFTLKSVRVYLGE 1192
>AF273828-1|AAG15177.1| 422|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 422
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/46 (21%), Positives = 29/46 (63%)
Frame = -3
Query: 242 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 105
G++ + +V++ ++L+CA+R++EP + ++ + + ++R F
Sbjct: 349 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 394
>AF273827-1|AAG15176.1| 421|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 421
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/46 (21%), Positives = 29/46 (63%)
Frame = -3
Query: 242 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 105
G++ + +V++ ++L+CA+R++EP + ++ + + ++R F
Sbjct: 348 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 393
>AF273826-1|AAG15175.1| 419|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 419
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/46 (21%), Positives = 29/46 (63%)
Frame = -3
Query: 242 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 105
G++ + +V++ ++L+CA+R++EP + ++ + + ++R F
Sbjct: 346 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 391
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 78 SYIEKITRKKM*KYPFNLTTYWIY*TNNDYRFL 176
S+I +TR + P+ TT +Y + DYRFL
Sbjct: 184 SFINNVTRADVEVQPYAFTTKALYVGHLDYRFL 216
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 78 SYIEKITRKKM*KYPFNLTTYWIY*TNNDYRFL 176
S+I +TR + P+ TT +Y + DYRFL
Sbjct: 184 SFINNVTRADVEVQPYAFTTKALYVGHLDYRFL 216
>AC024771-7|AAK70663.4| 407|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 86 protein.
Length = 407
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/46 (21%), Positives = 29/46 (63%)
Frame = -3
Query: 242 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 105
G++ + +V++ ++L+CA+R++EP + ++ + + ++R F
Sbjct: 334 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 379
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,111,613
Number of Sequences: 27780
Number of extensions: 362019
Number of successful extensions: 1027
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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