Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14b05
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 174 6e-44
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 109 2e-24
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 105 3e-23
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 97 2e-20
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 91 6e-19
04_04_0920 + 29429114-29430934 29 3.5
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 29 3.5
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 29 4.6
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 6.1
07_03_0948 - 22821069-22822067 28 8.1
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 174 bits (423), Expect = 6e-44
Identities = 84/190 (44%), Positives = 121/190 (63%)
Frame = -3
Query: 690 IXENXEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMR 511
I E+ ++K KLF +LD + I ASNTSS+SI +AS R + G+HFFNP P+M+
Sbjct: 97 IVESEDIKKKLFVELDKITKPSAILASNTSSISITRLASATNRPCQVIGMHFFNPPPIMK 156
Query: 510 LLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGDA 331
L+E+++G++TSE + + + + +GKT I +D PGF+VNR+L+P I EA G A
Sbjct: 157 LIEIIRGADTSEEVFTKVKSFSERLGKTVICSQDYPGFIVNRILMPMINEAFWALYTGVA 216
Query: 330 SARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPIPLLEKLVAE 151
+ DID MKLG +PMGPL+LAD++GLD +L H D + + P PLL + V
Sbjct: 217 TKEDIDTGMKLGTNHPMGPLQLADFIGLDVCLSVLRVLHNGLGDSK-YSPCPLLVQYVDA 275
Query: 150 GKLGVKTGEG 121
G+LG K G+G
Sbjct: 276 GRLGKKRGQG 285
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 109 bits (263), Expect = 2e-24
Identities = 63/191 (32%), Positives = 101/191 (52%)
Frame = -3
Query: 690 IXENXEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMR 511
+ EN ++K ++F L+ PSH + A+NTS++ +N I + KD+ G HFF+P VM
Sbjct: 401 VIENVKLKQQIFSDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRIVGAHFFSPAHVMP 460
Query: 510 LLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGDA 331
LLE+V+ TS +++ GK + KT I + GF VNR+ PY A+ + G
Sbjct: 461 LLEIVRTQHTSPQVVVDLLDVGKKIKKTPIVVGNCTGFAVNRMFFPYTQSALLFVDLG-M 519
Query: 330 SARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPIPLLEKLVAE 151
ID A G PMGP LAD VG + + FP ++++K + L+ ++ +
Sbjct: 520 DVYKIDRAC-TKFGMPMGPFRLADLVGFGVAAATGMQYLENFP-ERVYKSM-LIPLMMED 576
Query: 150 GKLGVKTGEGF 118
+ G + +GF
Sbjct: 577 KRTGEASRKGF 587
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = -3
Query: 396 VVNRLLVPYICEAIRLYERGDA-SARDIDIAMKLGAGYPM---GPLELADYVGLDTNKFI 229
+V + P I EA R+ + G A A D+DIA G G+P G + AD +G
Sbjct: 629 IVEMVFFPVINEACRVLDEGIAVKASDLDIASIFGMGFPPYRGGIMFWADSIGAKYIHDK 688
Query: 228 LDGWHKKFPDQQLFKPIPLLEKLVAEG 148
L+ W K++ D +FKP L + A G
Sbjct: 689 LEVWAKRYSD--IFKPCSYLAERAANG 713
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 105 bits (252), Expect = 3e-23
Identities = 52/147 (35%), Positives = 81/147 (55%)
Frame = -3
Query: 690 IXENXEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMR 511
+ EN +VK ++F L+ PSH + A+NTS++ ++ I +D+ G HFF+P VM
Sbjct: 416 VVENVKVKQQVFADLERYCPSHCVLATNTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVMP 475
Query: 510 LLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGDA 331
LLE+V+ + TS +++ GK + KT + + GF VNR+ PY A+ L +RG
Sbjct: 476 LLEIVRSNHTSPQVVVDLLDVGKKIKKTPVVVGNCTGFAVNRMFSPYTSIALLLVDRGMD 535
Query: 330 SARDIDIAMKLGAGYPMGPLELADYVG 250
+ + + G PMGP L D VG
Sbjct: 536 VYKIDQVCTEF--GMPMGPFRLLDLVG 560
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = -3
Query: 396 VVNRLLVPYICEAIRLYERGDAS-ARDIDIAMKLGAGYPM---GPLELADYVGLDTNKFI 229
+V + P I EA ++ G A+ A D+DIA G G+P G + AD +G
Sbjct: 644 IVEMVFFPVINEACQVLSEGIANKASDLDIASIFGMGFPPYRGGIVYWADSIGAKRIHAR 703
Query: 228 LDGWHKKFPDQQLFKPIPLLEKLVAEG 148
L W K QLF+P L + AEG
Sbjct: 704 LSEWEMK--HGQLFRPCSYLSERAAEG 728
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 96.7 bits (230), Expect = 2e-20
Identities = 58/191 (30%), Positives = 91/191 (47%)
Frame = -3
Query: 690 IXENXEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMR 511
+ E +K +F L+ V P H I A+NTS++ +N + +D+ G HFF+P +M
Sbjct: 396 VIEKIPLKQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMP 455
Query: 510 LLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGDA 331
LLE+V+ +TS ++ GK + K + + GF VNR PY + L G
Sbjct: 456 LLEIVRTEKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGID 515
Query: 330 SARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPIPLLEKLVAE 151
R ID + G PMGP +L D G + D + F + L L++ +V
Sbjct: 516 VFR-IDRVIS-SFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNL--DSNLVDLMVQN 571
Query: 150 GKLGVKTGEGF 118
G+ G G+G+
Sbjct: 572 GRQGKSNGKGY 582
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 91.5 bits (217), Expect = 6e-19
Identities = 56/191 (29%), Positives = 95/191 (49%)
Frame = -3
Query: 690 IXENXEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMR 511
+ E+ +K K+F L+ S+ I A+NTS++ ++ I +D+ G HFF+P M
Sbjct: 398 VIEDLSLKQKIFADLEKYCHSNCILATNTSTIDLHLIGQKTSCQDRIAGAHFFSPAHAMP 457
Query: 510 LLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGDA 331
LLE+++ TS ++ K + KT I + GF VNR+ P+ A L + G
Sbjct: 458 LLEIIRTHRTSSQVVIDLLNVAKQIRKTPIVVGNCTGFAVNRMFFPFTQVAYFLVDYG-L 516
Query: 330 SARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPIPLLEKLVAE 151
ID + G PMGP LAD VG + + +P ++ +K + L++ ++ E
Sbjct: 517 DVYHIDHVI-TKFGMPMGPFRLADLVGFGVAIASRKQYLQSYP-ERCYKSM-LIQIMLEE 573
Query: 150 GKLGVKTGEGF 118
+ G + +GF
Sbjct: 574 NRTGESSRKGF 584
Score = 35.1 bits (77), Expect = 0.053
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = -3
Query: 414 KDTPGFVVNRLLVPYICEAIRLYERGDA-SARDIDIAMKLGAGYPM---GPLELADYVGL 247
K T +V +L P + EA RL + G A A D+D+A +G G+P G + AD G
Sbjct: 620 KLTDDEIVEMMLFPVVNEACRLLDEGVAMKASDLDVASIMGRGFPSYRGGVMFWADSFGA 679
Query: 246 DTNKFILDGWHKKFPDQQLFKPIPLLEKLVAEG 148
L W K +F+P L +G
Sbjct: 680 KYIYDRLKDWSKYHGG--IFEPYEYLSTRARQG 710
>04_04_0920 + 29429114-29430934
Length = 606
Score = 29.1 bits (62), Expect = 3.5
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = -3
Query: 651 QLDGVAPSHTIFASNTSSLSINEIASVVK-------RKDKFGGLHFFNPVPVMRLLEVVK 493
+ DG+AP+ TI++S SL+ +S + +K + G F V VM +E +
Sbjct: 287 EADGIAPNATIYSSIIRSLADAHESSAAEDLYNEAWKKGRLGDPDMFLKVIVMH-VEAGR 345
Query: 492 GSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYER 340
E K M E G V CI GFV R L P AIR Y++
Sbjct: 346 -VEKIMGVAKDMRETGLRV-TDCILSTIVNGFVKRRGLKP----AIRAYDK 390
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 450 WGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYER 340
W K + +T + TP V+ L + +C+A RLY R
Sbjct: 107 WLKRAAEASVTARLTPEHAVDMLKLARLCDAPRLYLR 143
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 291 GYPMGPLELADYVGLDTNKFILDGWHKKFPDQ 196
GY + PL A + TN+F+ W+K FP Q
Sbjct: 744 GYWISPLSYAQNA-ISTNEFLGRSWNKSFPGQ 774
>03_05_0001 -
19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 526 RIEEMKTTKFVFPFYDGCNFIYR 594
R+EE+ TTK +F +D C YR
Sbjct: 310 RLEELPTTKHLFTLFDSCFPYYR 332
>07_03_0948 - 22821069-22822067
Length = 332
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 214 QEVSGSATLQTYTLARKACC-*RKIRCEDWGR 122
Q + ATL T++LA CC +RC++ GR
Sbjct: 40 QSLGNPATLSTWSLASADCCEWDHVRCDEAGR 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,693,986
Number of Sequences: 37544
Number of extensions: 379515
Number of successful extensions: 880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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