Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b04
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827...    30   2.0  
10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359...    28   6.0  

>07_03_1263 +
           25279899-25279985,25280263-25282372,25282700-25282793,
           25283178-25283314,25283419-25283454,25283602-25283642,
           25284036-25284125,25284229-25284284,25284947-25285030,
           25285072-25285150
          Length = 937

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 582 RLFYNGQLHGQLVHFILVEGRCNHSRMNRFYGL 484
           RL Y G  H Q+ + I++ G C H  +   YGL
Sbjct: 413 RLKYQGFKHDQITYSIVLHGCCRHMDIEVAYGL 445


>10_08_1045 -
           22535516-22535593,22535681-22535756,22535843-22535946,
           22536048-22536176,22536539-22536700,22537029-22537259,
           22537345-22537428,22537515-22537583,22537671-22537739,
           22537827-22537889,22537913-22538052,22538527-22539097
          Length = 591

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = +1

Query: 418 CK*LDYENEFERIKKKVLALPSETIKTIHSA---MITTSFDQYKMNELTMKL---TIIK* 579
           CK  D E    + K K  A   ETIK+I SA    +    D   +++ TM++    + + 
Sbjct: 396 CKSFDKETHIIKKKFKCTAEDEETIKSIMSAPESQLVVHIDDVSISQKTMQILTNPVTES 455

Query: 580 SELYINISLRKKVNFSSYHR 639
           S  Y++  +   +N    HR
Sbjct: 456 STSYLDDHIFLPMNIKEKHR 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,378,141
Number of Sequences: 37544
Number of extensions: 267509
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)