Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b04
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-352|AAS64934.1| 3966|Drosophila melanogaster CG15804-PB...    31   2.0  
AE014296-351|AAF47564.1| 3868|Drosophila melanogaster CG15804-PA...    31   2.0  
BT011482-1|AAR99140.1|  263|Drosophila melanogaster RE06553p pro...    29   7.9  
AE013599-2756|AAF57647.2|  263|Drosophila melanogaster CG18609-P...    29   7.9  

>AE014296-352|AAS64934.1| 3966|Drosophila melanogaster CG15804-PB,
           isoform B protein.
          Length = 3966

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 427 LDYENEFERIKKKVLALPSETIKTIHSAMITTSFDQYKMNELTMKLTIIK*SELYINISL 606
           +D  +EFE+IK + L +P  T + + SA       + K+ ELT ++       L +  ++
Sbjct: 503 VDICDEFEKIKYRALEIPKSTEELLESAEYMIHVKKDKIAELTDRIQYC----LQVGTNI 558

Query: 607 RKKVNFSSYH 636
            +    S YH
Sbjct: 559 VELTEMSKYH 568


>AE014296-351|AAF47564.1| 3868|Drosophila melanogaster CG15804-PA,
           isoform A protein.
          Length = 3868

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 427 LDYENEFERIKKKVLALPSETIKTIHSAMITTSFDQYKMNELTMKLTIIK*SELYINISL 606
           +D  +EFE+IK + L +P  T + + SA       + K+ ELT ++       L +  ++
Sbjct: 503 VDICDEFEKIKYRALEIPKSTEELLESAEYMIHVKKDKIAELTDRIQYC----LQVGTNI 558

Query: 607 RKKVNFSSYH 636
            +    S YH
Sbjct: 559 VELTEMSKYH 568


>BT011482-1|AAR99140.1|  263|Drosophila melanogaster RE06553p
           protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 597 VYVQFRLFYNGQLHGQLVHFILVEGRCN 514
           VY  F++ YNG   G + +++ + G CN
Sbjct: 57  VYNLFQVLYNGLYFGMVFYYLFIVGICN 84


>AE013599-2756|AAF57647.2|  263|Drosophila melanogaster CG18609-PA
           protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 597 VYVQFRLFYNGQLHGQLVHFILVEGRCN 514
           VY  F++ YNG   G + +++ + G CN
Sbjct: 57  VYNLFQVLYNGLYFGMVFYYLFIVGICN 84


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,172,069
Number of Sequences: 53049
Number of extensions: 510887
Number of successful extensions: 751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)