Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b03
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    27   3.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   7.6  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   10.0 

>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 444 WVLLSELP*SDTQACPIVNFW 506
           W+ L+ LP   + AC +V+FW
Sbjct: 156 WIWLTVLPSEISAACEVVDFW 176


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 210 GFPPPCPALVSNLASSGARCAGERPATCCSSATNFSECS 326
           G+PP   + + N + S +   G   A   S+ T+FS+ S
Sbjct: 275 GYPPTTSSALPNASGSSSSFFGLPTAVSASAGTSFSDIS 313


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 21/77 (27%), Positives = 31/77 (40%)
 Frame = -2

Query: 385 RPEYPATLILSADHDDRVVPLHSLKFVAELQHVAGRSPAQRAPLLARFDTKAGHGGGKPT 206
           RPE     ++SA     +V L  L   +    + G +P +   L +RF   +GH  G   
Sbjct: 221 RPE--RDYLVSAPVSLPLVGLTQLVHFSVTAQILGLNPGE---LASRFSAASGHSQGIVV 275

Query: 205 TKIIDEHTDILCFMTQA 155
              +   TD   FM  A
Sbjct: 276 AAAVSASTDSASFMENA 292


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 574 INQRPDLYGAAVVQVGVLDMLRFQKFTIGHAWVSDYGSS 458
           +N   D + +A+ +   L   R +K     AW++DY S+
Sbjct: 794 LNTYNDYFNSAISENPTLKSDRSEKVAFYSAWITDYKST 832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,499
Number of Sequences: 5004
Number of extensions: 43363
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)