Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14b03
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44... 182 2e-46
09_04_0503 - 18170645-18170858,18171029-18171222,18171419-181716... 70 2e-12
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 56 3e-08
04_04_0790 + 28083116-28083337,28083446-28083652,28083739-280838... 53 2e-07
06_03_1503 - 30621089-30621170,30621258-30621438,30621462-306215... 50 2e-06
02_02_0501 - 10999203-10999754,11000724-11001460,11001461-110018... 36 0.039
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 30 1.9
09_02_0252 - 6315834-6315959,6316074-6317018 29 2.6
01_06_0989 - 33618841-33619161 29 2.6
03_02_0836 - 11637618-11637962 29 3.4
04_04_0633 - 26771487-26771591,26771708-26771782,26771906-267719... 28 5.9
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 28 5.9
05_04_0262 - 19514426-19515625 28 7.8
04_04_0699 - 27345243-27346199 28 7.8
01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550 28 7.8
>01_01_0058 +
440328-440437,440514-440733,441605-441805,441915-441985,
442058-442217,444166-444492,444529-444759,444869-445249,
445573-445648,445736-445799,446334-446469,447666-447710,
447851-447916
Length = 695
Score = 182 bits (443), Expect = 2e-46
Identities = 83/132 (62%), Positives = 104/132 (78%), Gaps = 4/132 (3%)
Frame = -2
Query: 670 AAAEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTI 491
A AE ++S YT L I+GGSNGGLL+AAC+NQRPDL+G A+ VGV+DMLRF KFTI
Sbjct: 533 ACAELLISAGYTSYRQLCIEGGSNGGLLIAACVNQRPDLFGCALAHVGVMDMLRFHKFTI 592
Query: 490 GHAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSE----NRPEYPATLILSADHDDRVVPL 323
GHAW +DYG SDN+ +F +L+KYSPLHN++ P E N +YPA ++L+ADHDDRVVPL
Sbjct: 593 GHAWTTDYGCSDNEEEFHWLIKYSPLHNVRRPWEQSFVNCCQYPAIMLLTADHDDRVVPL 652
Query: 322 HSLKFVAELQHV 287
HSLK +A LQ+V
Sbjct: 653 HSLKLLATLQYV 664
>09_04_0503 - 18170645-18170858,18171029-18171222,18171419-18171629,
18172162-18172553,18172926-18173054,18173353-18173487,
18173885-18174088,18174716-18174771,18174793-18174950,
18175864-18176231
Length = 686
Score = 69.7 bits (163), Expect = 2e-12
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%)
Frame = -2
Query: 670 AAAEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTI 491
A +++ E + L G S GGLLV A IN PDL+ AAV++V LD+ +
Sbjct: 506 ACGTHLIKEGFVHKNRLCAIGCSAGGLLVGAVINMLPDLFSAAVLKVPFLDICNTMMDST 565
Query: 490 GHAWVSDY---GSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATLILSADHDDRVVPLH 320
+ DY G + T+F+ + YSP N+ P YP L+ ++ +D RV
Sbjct: 566 LPLTILDYEEFGDPNISTEFDTIRSYSPYDNLSPDI----CYPPVLVTASFNDTRVGVWE 621
Query: 319 SLKFVAELQHVAGRSPAQRAPLLARFDTKAGHGGGKPTTKIIDEHTDILCFMTQALGL 146
+ K+V++++ + +S + ++ + + ++GH G DE F+ +ALGL
Sbjct: 622 AAKWVSKVRDITCQSCSW--SVILKTNMQSGHFGEGGRFMHCDETAFEYAFLMKALGL 677
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 55.6 bits (128), Expect = 3e-08
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Frame = -2
Query: 670 AAAEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTI 491
+ E+++ + + L G S GGLLVA+ IN RPDL+ A V++V LD+ I
Sbjct: 554 SCGEFLLEKGIIKENKLAGWGYSAGGLLVASAINTRPDLFRAVVLKVPFLDVCNTLLHPI 613
Query: 490 GHAWVSDY---GSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATLILSADHDDRVVPLH 320
DY G + +F + KYSP NIQ ++ P YPA + S+ + R
Sbjct: 614 LPLTAIDYEEFGFPVDHEEFLSIRKYSPYDNIQ---KDVP-YPAVFVTSS-FNTRFGVWE 668
Query: 319 SLKFVAELQHVAGRSPAQRAPL 254
+ K+VA+++ V P + + L
Sbjct: 669 AAKWVAKVREVTRYDPERPSQL 690
>04_04_0790 +
28083116-28083337,28083446-28083652,28083739-28083809,
28083898-28084063,28084189-28084788,28084928-28085323
Length = 553
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = -2
Query: 670 AAAEYMVSERYTRPALLTIQGGSNGGLLVAACINQ 566
AA E++VS YT P+ L ++G SNGGLLVAACINQ
Sbjct: 515 AAGEFLVSAGYTNPSRLCVEGASNGGLLVAACINQ 549
>06_03_1503 -
30621089-30621170,30621258-30621438,30621462-30621510,
30621777-30621842,30621976-30622014,30622414-30622779,
30623290-30623448,30623805-30623993,30624877-30625168,
30626251-30626597,30627239-30627433,30627518-30627798,
30629525-30629690
Length = 803
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = -2
Query: 670 AAAEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVVQVGVLDML 512
A AE+++ +Y L I G S GGLL+ A +N RPDL+ AAV V +D+L
Sbjct: 597 ACAEHLIENKYCSKEKLCINGRSAGGLLMGAVLNMRPDLFKAAVAGVPFVDVL 649
>02_02_0501 -
10999203-10999754,11000724-11001460,11001461-11001836,
11001917-11001946,11002718-11002912,11003604-11004149
Length = 811
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 670 AAAEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAV 539
A AE+++ + +P + + G S GG L A C+ + PD + AV
Sbjct: 659 AGAEWLIKKGLAKPGHIGLYGWSYGGFLSAMCLARFPDTFSCAV 702
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 249 ASSGARCAGERPATCCSSATNFSECSGTTRSSW 347
+S GA AG+ P T ++A FS + TT S W
Sbjct: 462 SSVGASVAGQAPQTASTTALTFSFPASTTLSPW 494
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 210 GFPP-PCPALVSNLASSGARCAGERPATCCSSAT 308
G+P P PA ++ SS + A + A+CCSS T
Sbjct: 138 GYPRMPTPARAASCPSSSSAAAADDAASCCSSDT 171
>01_06_0989 - 33618841-33619161
Length = 106
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 325 LHSLKFVAELQHVAGRSPAQRAPLLARFDTKAGHGGGKPTTKIIDE--HTDILCFMTQAL 152
LH + V +++ V + R L + AG G G+P K++ E + +C+ +A
Sbjct: 32 LHEMAAVEKMERVEVKIRVTRRQLQELLEKAAGEGKGRPVEKVLAEMISSGKVCYEQEAA 91
Query: 151 G 149
G
Sbjct: 92 G 92
>03_02_0836 - 11637618-11637962
Length = 114
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 327 GTTRSSWSADSISVAGYSGRFSLGG*MLC 413
G R SWS DS+S G GR GG C
Sbjct: 33 GCIRKSWSNDSLSSYGGGGRAGGGGAQAC 61
>04_04_0633 -
26771487-26771591,26771708-26771782,26771906-26771981,
26772096-26772144,26772848-26773037,26773119-26773292,
26773415-26773543
Length = 265
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 237 VSNLASSGARCAGERPATCCSSATN 311
VS++ SS + CA PAT +SA N
Sbjct: 122 VSSITSSNSSCANNAPATSMASAAN 146
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 416 GRVLQQVLELGLIVRASVVRHPGVSYRELLEA*HVKNSDLHDGGPVEVGALVDAGGD 586
G ++Q+ VV GV ++ LL+ SD H G PVE GGD
Sbjct: 228 GSIIQKFYHENFTADRLVVAASGVDHQYLLDVAEPLLSDWHKGSPVERPESKYIGGD 284
>05_04_0262 - 19514426-19515625
Length = 399
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 120 GNIYHFTNFRPKACVMKHRISVCSSIILVVGFPPPCPALVSNLASSG 260
G YH + P+A ++ H S S+ + P PCP VS L S G
Sbjct: 22 GGAYHVQS-NPQAALLFHSYS--STAVTGGSDPEPCPDTVSYLVSCG 65
>04_04_0699 - 27345243-27346199
Length = 318
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 201 LVVGFPPPCPALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSWSADS 359
L +G A + A++G + PAT SS ++ S C+ TT SS ++ S
Sbjct: 211 LRIGSEIAAAAAAAAAAAAGDKRPSPEPATSESSFSSSSSCTTTTTSSSTSSS 263
>01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550
Length = 318
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 171 HRISVCSSIILVVGFPPPCP-ALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSW 347
HR++ + + +V PPP P + +++ S A + C A S +T+ +
Sbjct: 140 HRVAGGGARVTLVS-PPPAPQSQCASMQPSPASASSSGGDACSFGAAAMYSPSPSTQQAP 198
Query: 348 SADSISVAGYS 380
A +++VAGY+
Sbjct: 199 QAATLAVAGYT 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,330,344
Number of Sequences: 37544
Number of extensions: 360854
Number of successful extensions: 1389
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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