Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b03
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-11|AAK39270.2|  737|Caenorhabditis elegans Dipeptidyl p...    35   0.046
U13070-5|AAC46639.1|  629|Caenorhabditis elegans Dipeptidyl pept...    33   0.25 
AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans Phosphodieste...    30   1.7  
AC024877-3|AAF60898.1|  760|Caenorhabditis elegans Phosphodieste...    30   1.7  
U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily ass...    29   2.3  
U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily ass...    29   2.3  
Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical pr...    29   3.0  
X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.        29   4.0  
AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and gl...    29   4.0  
Z99270-1|CAB16470.4|  500|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    28   5.3  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    28   5.3  
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    28   5.3  
Z82093-1|CAB05018.1|  229|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF025464-5|AAB71013.2|  127|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    27   9.2  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    27   9.2  

>AF100669-11|AAK39270.2|  737|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 5 protein.
          Length = 737

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
 Frame = -2

Query: 610 GGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTIGHAWVSDYGSSD--NKTQFE 437
           GGS+GG LV+  I Q P  Y + V    V+++      T    W    G+ +  + T+  
Sbjct: 590 GGSHGGFLVSHLIGQYPGFYKSCVALNPVVNIATMHDITDIPEWCYFEGTGEYPDWTKIT 649

Query: 436 YLLKYSPLHNIQPPSENRPEYPATLILSADHDDRVVPLHSLKFVAELQ 293
              +   + N  P +         L+L  + D RVVP H   F+  L+
Sbjct: 650 TTEQREKMFNSSPIAHVENATTPYLLLIGEKDLRVVP-HYRAFIRALK 696


>U13070-5|AAC46639.1|  629|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 4 protein.
          Length = 629

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 1/175 (0%)
 Frame = -2

Query: 664 AEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTIGH 485
           A+ +V +       + I G S+GG L+ +C+    ++  AAV   GV D+L   + T  H
Sbjct: 455 AKALVEQGKVDAEKVLITGSSSGGYLILSCLISPKNIIKAAVSVYGVADLLALDEDT--H 512

Query: 484 AWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATLILSADHDDRVVPLHSLKFV 305
                Y    N+       + + ++  + P  +  +    +      +D VVP+     +
Sbjct: 513 KLERCY----NEMLIGKYPEQASIYEERSPIYHIDKIRTPIAFLHGREDTVVPMSQSITM 568

Query: 304 AELQHVAGRSPAQRAPLLARFDTKAGHGGGKPTTKIIDEHTD-ILCFMTQALGLK 143
            E    +G + A     L  FD   G G G    ++I E T+    F+ +A+G++
Sbjct: 569 YEKIRASGVTTA-----LMLFD---GEGHGFRNGQVIKESTEATFYFLMKAVGIE 615


>AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoformb protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 532 VGVLDMLRFQKFT-IGHAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATL 362
           V +   L  ++F  + HA V    ++D    FEYL K++ +H    P E R     T+
Sbjct: 590 VNIFSSLSREEFIQMRHAMVEMVLATDISRHFEYLAKFNKMHVTDVPEEQRDTNSLTI 647


>AC024877-3|AAF60898.1|  760|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoforma protein.
          Length = 760

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 532 VGVLDMLRFQKFT-IGHAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATL 362
           V +   L  ++F  + HA V    ++D    FEYL K++ +H    P E R     T+
Sbjct: 590 VNIFSSLSREEFIQMRHAMVEMVLATDISRHFEYLAKFNKMHVTDVPEEQRDTNSLTI 647


>U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform a protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 276 ERPATCCSSATNFSECSGTTRSSWSADS 359
           +RP +  S+ +N S CS +TR S S DS
Sbjct: 385 QRPKSWASTVSNESSCSSSTRESDSTDS 412


>U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform b protein.
          Length = 638

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 276 ERPATCCSSATNFSECSGTTRSSWSADS 359
           +RP +  S+ +N S CS +TR S S DS
Sbjct: 561 QRPKSWASTVSNESSCSSSTRESDSTDS 588


>Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical
           protein C34B4.2a protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +3

Query: 249 ASSGARCAGERPATCCSSATNFSECSGTTRSSWSADSISV 368
           ASSG   AG   AT    + + SECS T+ SS S+ + SV
Sbjct: 246 ASSGNSTAGPIRATFGYQSASSSECSSTSSSSASSPAPSV 285


>U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical
           protein C15B12.2 protein.
          Length = 269

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = +2

Query: 47  SQRHXC---FWYIYIILCAFVWIIILLWQHLSFYKLQTQSLRHET*DISVFVNNFSGGFS 217
           S R+ C   FWYI   +   VW ++L    L  Y  +  S  H       F+  FS  F 
Sbjct: 53  SSRYFCGHMFWYILTFITYLVWTLLLWIPCLYHYTCRHNSFYHRHKLCRSFIRYFSVTFH 112

Query: 218 AAV 226
            ++
Sbjct: 113 YSI 115


>X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 216 PPPCPALVSNLASSGARCAGERPATCCSSAT----NFSECSGTTRSSWSAD-SISVAGYS 380
           P P    V +   +GA+C    P   CS A      F E S TT +  + + ++S +GYS
Sbjct: 228 PRPDACSVKDACLNGAKCFPNGPKVFCSCAVGFIGEFCEISLTTTTPTTVEITVSTSGYS 287


>AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein2 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 216 PPPCPALVSNLASSGARCAGERPATCCSSAT----NFSECSGTTRSSWSAD-SISVAGYS 380
           P P    V +   +GA+C    P   CS A      F E S TT +  + + ++S +GYS
Sbjct: 228 PRPDACSVKDACLNGAKCFPNGPKVFCSCAVGFIGEFCEISLTTTTPTTVEITVSTSGYS 287


>Z99270-1|CAB16470.4|  500|Caenorhabditis elegans Hypothetical
           protein Y37A1A.3 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 44  GSQRHXCFWYIYIILCAFVWIIILLWQHLSFYKLQTQSLRH 166
           G++ H  + Y++ ++     ++IL W H S   L +Q ++H
Sbjct: 194 GNETHWWYLYLFQLIINTTVLVILPWVHESPSYLASQDIKH 234


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = +2

Query: 65  FWYIYIILCAF----VWIIILLWQHLS 133
           FWY+ +++  F     W+++ LW+HL+
Sbjct: 289 FWYLALLVFTFGSFFYWLLVSLWRHLN 315


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = +2

Query: 65  FWYIYIILCAF----VWIIILLWQHLS 133
           FWY+ +++  F     W+++ LW+HL+
Sbjct: 289 FWYLALLVFTFGSFFYWLLVSLWRHLN 315


>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -3

Query: 255 CSPGSTPRRGTAAEN-PP---LKLLTNTLISYVS*RKLWV*SL*NDKCCHSKIIIHTN 94
           C+P   PRR  A  N PP   + + TN +IS    RK  V SL + +  H   I+  N
Sbjct: 12  CAPSPRPRRNYALANIPPPAAVHIRTNDMISPEERRKSRVKSLKHAQLLHGYYILSNN 69


>Z82093-1|CAB05018.1|  229|Caenorhabditis elegans Hypothetical
           protein ZK39.2 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 252 SSGARCAGERPATCCSSATNFSECSGTTRSSWSADSIS-VAGY 377
           SSG    G R  T C+     + CS T+   W+  S S  AG+
Sbjct: 120 SSGGIWLGARRTTACAKQHKTTSCSTTSSFRWTDSSASGTAGF 162


>AF025464-5|AAB71013.2|  127|Caenorhabditis elegans Hypothetical
           protein F53G2.3 protein.
          Length = 127

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -2

Query: 322 HSLKFVAELQHVAGRSPAQRAPLLARFDTKAGHGGGKPTTKIIDEHTDILCFMTQALGLK 143
           H L +  EL+  A  +P   A L      + G GG   +  + +EHT I C   +  G++
Sbjct: 43  HKLVYDKELEPFAAETPCGIAYLQNGL-AEVGSGGAHTSVNLREEHTRIACVPKKCGGVE 101


>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +3

Query: 216 PPPCPALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSW 347
           PPP P LV+  A+ GA C       C       + C G     W
Sbjct: 18  PPPSPPLVNEKAAIGALCVVCGDRACSHLYYGVAACHGCKCFFW 61


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +3

Query: 216 PPPCPALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSW 347
           PPP P LV+  A+ GA C       C       + C G     W
Sbjct: 18  PPPSPPLVNEKAAIGALCVVCGDRACSHLYYGVAACHGCKCFFW 61


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +3

Query: 216 PPPCPALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSW 347
           PPP P LV+  A+ GA C       C       + C G     W
Sbjct: 18  PPPSPPLVNEKAAIGALCVVCGDRACSHLYYGVAACHGCKCFFW 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,906
Number of Sequences: 27780
Number of extensions: 262893
Number of successful extensions: 841
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)