Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b02
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0177 + 1247937-1249067                                           27   7.1  
01_05_0499 - 22750794-22751237,22751337-22751456                       27   7.1  
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694...    27   9.4  

>07_01_0177 + 1247937-1249067
          Length = 376

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 179 VRFFLDRALRNLSCALARRARGPVGRGCSLCVLSRLWDRADLYCPCCSRACLY 337
           VR FLD  +  L      RA G    G  LC L  + +R+ +    C   CL+
Sbjct: 307 VRSFLDFVMWRLH--EGARAGGDAAIGAGLCALRHMSERSMVIAAICIALCLH 357


>01_05_0499 - 22750794-22751237,22751337-22751456
          Length = 187

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 314 CCSRACLYRPCSPFFLGRR 370
           CCS +CL RP  PF   RR
Sbjct: 11  CCSSSCLSRPPPPFARRRR 29


>08_02_0600 -
           19166283-19166851,19166988-19168839,19169347-19169415,
           19171797-19171844,19173500-19173622
          Length = 886

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 77  KVISSEYIRVFLVLLIWAVVSRQCRRVDHVNDWVVRFFLDRALRNLSCALARR 235
           K+ S +  RV++VL +W     +   V  V DW  R  ++   ++++ ALA R
Sbjct: 589 KIRSGDSFRVYVVLPMWPEGVPESATVQAVLDW-QRRTMEMMYKDVAAALAAR 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,862,599
Number of Sequences: 37544
Number of extensions: 125865
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)