Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14b02
(532 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC042877-1|AAH42877.1| 259|Homo sapiens RPE-spondin protein. 30 4.4
AY040546-1|AAK83466.1| 298|Homo sapiens RPE-spondin protein. 30 4.4
AY311388-1|AAP74958.1| 2551|Homo sapiens FEX2 protein. 30 5.8
AY227444-1|AAO39681.1| 1416|Homo sapiens hyaluronan receptor for... 30 5.8
AK160380-1|BAD18723.1| 1055|Homo sapiens FLJ00344 protein protein. 30 5.8
AK074051-1|BAB84877.1| 1736|Homo sapiens FLJ00122 protein protein. 30 5.8
AB052958-1|BAC15608.1| 2551|Homo sapiens FELE-2 protein. 30 5.8
U17760-1|AAC51352.1| 1172|Homo sapiens laminin S B3 chain protein. 29 7.7
D37766-1|BAA22263.1| 1172|Homo sapiens Laminin-5 beta3 chain pro... 29 7.7
BC075838-1|AAH75838.1| 1172|Homo sapiens laminin, beta 3 protein. 29 7.7
AY035783-1|AAK61364.1| 1172|Homo sapiens laminin 5 beta 3 subuni... 29 7.7
AL031316-2|CAI20062.1| 1172|Homo sapiens laminin, beta 3 protein. 29 7.7
AL023754-1|CAI19989.1| 1172|Homo sapiens laminin, beta 3 protein. 29 7.7
>BC042877-1|AAH42877.1| 259|Homo sapiens RPE-spondin protein.
Length = 259
Score = 30.3 bits (65), Expect = 4.4
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 263 SLCVLSRLWDRADLYCPCCSRACLYRPCSPFFLGRRAD 376
+LC LSRLW A C R C R + F G R D
Sbjct: 2 ALCALSRLWPGAQAGCAEAGRCCPGRDPACFARGWRLD 39
>AY040546-1|AAK83466.1| 298|Homo sapiens RPE-spondin protein.
Length = 298
Score = 30.3 bits (65), Expect = 4.4
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 263 SLCVLSRLWDRADLYCPCCSRACLYRPCSPFFLGRRAD 376
+LC LSRLW A C R C R + F G R D
Sbjct: 41 ALCALSRLWPGAQAGCAEAGRCCPGRDPACFARGWRLD 78
>AY311388-1|AAP74958.1| 2551|Homo sapiens FEX2 protein.
Length = 2551
Score = 29.9 bits (64), Expect = 5.8
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Frame = +2
Query: 131 VVSRQCRRVDHVNDWVVRFFLDRALRNLSCALARRARGPVGRGCSLCVLSRLWDRADLYC 310
V+ Q R D+ + ++R L+C ++ G R C S R L+
Sbjct: 1264 VLEIQKNRCDNNDTTIIRGRCRTCSSELTCPFGTKSLGNEKRRC--IYTSYFMGRRTLFI 1321
Query: 311 PC---CSRACLYRPCSPFFLGRRADPC 382
C C R + R C F G + PC
Sbjct: 1322 GCQPKCVRTVITRECCAGFFGPQCQPC 1348
>AY227444-1|AAO39681.1| 1416|Homo sapiens hyaluronan receptor for
endocytosis precursor protein.
Length = 1416
Score = 29.9 bits (64), Expect = 5.8
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Frame = +2
Query: 131 VVSRQCRRVDHVNDWVVRFFLDRALRNLSCALARRARGPVGRGCSLCVLSRLWDRADLYC 310
V+ Q R D+ + ++R L+C ++ G R C S R L+
Sbjct: 129 VLEIQKNRCDNNDTTIIRGRCRTCSSELTCPFGTKSLGNEKRRC--IYTSYFMGRRTLFI 186
Query: 311 PC---CSRACLYRPCSPFFLGRRADPC 382
C C R + R C F G + PC
Sbjct: 187 GCQPKCVRTVITRECCAGFFGPQCQPC 213
>AK160380-1|BAD18723.1| 1055|Homo sapiens FLJ00344 protein protein.
Length = 1055
Score = 29.9 bits (64), Expect = 5.8
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Frame = +2
Query: 131 VVSRQCRRVDHVNDWVVRFFLDRALRNLSCALARRARGPVGRGCSLCVLSRLWDRADLYC 310
V+ Q R D+ + ++R L+C ++ G R C S R L+
Sbjct: 697 VLEIQKNRCDNNDTTIIRGRCRTCSSELTCPFGTKSLGNEKRRC--IYTSYFMGRRTLFI 754
Query: 311 PC---CSRACLYRPCSPFFLGRRADPC 382
C C R + R C F G + PC
Sbjct: 755 GCQPKCVRTVITRECCAGFFGPQCQPC 781
>AK074051-1|BAB84877.1| 1736|Homo sapiens FLJ00122 protein protein.
Length = 1736
Score = 29.9 bits (64), Expect = 5.8
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Frame = +2
Query: 131 VVSRQCRRVDHVNDWVVRFFLDRALRNLSCALARRARGPVGRGCSLCVLSRLWDRADLYC 310
V+ Q R D+ + ++R L+C ++ G R C S R L+
Sbjct: 449 VLEIQKNRCDNNDTTIIRGRCRTCSSELTCPFGTKSLGNEKRRC--IYTSYFMGRRTLFI 506
Query: 311 PC---CSRACLYRPCSPFFLGRRADPC 382
C C R + R C F G + PC
Sbjct: 507 GCQPKCVRTVITRECCAGFFGPQCQPC 533
>AB052958-1|BAC15608.1| 2551|Homo sapiens FELE-2 protein.
Length = 2551
Score = 29.9 bits (64), Expect = 5.8
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Frame = +2
Query: 131 VVSRQCRRVDHVNDWVVRFFLDRALRNLSCALARRARGPVGRGCSLCVLSRLWDRADLYC 310
V+ Q R D+ + ++R L+C ++ G R C S R L+
Sbjct: 1264 VLEIQKNRCDNNDTTIIRGRCRTCSSELTCPFGTKSLGNEKRRC--IYTSYFMGRRTLFI 1321
Query: 311 PC---CSRACLYRPCSPFFLGRRADPC 382
C C R + R C F G + PC
Sbjct: 1322 GCQPKCVRTVITRECCAGFFGPQCQPC 1348
>U17760-1|AAC51352.1| 1172|Homo sapiens laminin S B3 chain protein.
Length = 1172
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 254 RGCSLCVLSRLWDRADLYCPCCSRACLYRPCSPFFLGRRADPCRP 388
+GC C + L R D+ C S CL C P +G + D C P
Sbjct: 426 QGCHRCDCNILGSRRDMPCDEESGRCL---CLPNVVGPKCDQCAP 467
>D37766-1|BAA22263.1| 1172|Homo sapiens Laminin-5 beta3 chain
protein.
Length = 1172
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 254 RGCSLCVLSRLWDRADLYCPCCSRACLYRPCSPFFLGRRADPCRP 388
+GC C + L R D+ C S CL C P +G + D C P
Sbjct: 426 QGCHRCDCNILGSRRDMPCDEESGRCL---CLPNVVGPKCDQCAP 467
>BC075838-1|AAH75838.1| 1172|Homo sapiens laminin, beta 3 protein.
Length = 1172
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 254 RGCSLCVLSRLWDRADLYCPCCSRACLYRPCSPFFLGRRADPCRP 388
+GC C + L R D+ C S CL C P +G + D C P
Sbjct: 426 QGCHRCDCNILGSRRDMPCDEESGRCL---CLPNVVGPKCDQCAP 467
>AY035783-1|AAK61364.1| 1172|Homo sapiens laminin 5 beta 3 subunit
protein.
Length = 1172
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 254 RGCSLCVLSRLWDRADLYCPCCSRACLYRPCSPFFLGRRADPCRP 388
+GC C + L R D+ C S CL C P +G + D C P
Sbjct: 426 QGCHRCDCNILGSRRDMPCDEESGRCL---CLPNVVGPKCDQCAP 467
>AL031316-2|CAI20062.1| 1172|Homo sapiens laminin, beta 3 protein.
Length = 1172
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 254 RGCSLCVLSRLWDRADLYCPCCSRACLYRPCSPFFLGRRADPCRP 388
+GC C + L R D+ C S CL C P +G + D C P
Sbjct: 426 QGCHRCDCNILGSRRDMPCDEESGRCL---CLPNVVGPKCDQCAP 467
>AL023754-1|CAI19989.1| 1172|Homo sapiens laminin, beta 3 protein.
Length = 1172
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 254 RGCSLCVLSRLWDRADLYCPCCSRACLYRPCSPFFLGRRADPCRP 388
+GC C + L R D+ C S CL C P +G + D C P
Sbjct: 426 QGCHRCDCNILGSRRDMPCDEESGRCL---CLPNVVGPKCDQCAP 467
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,732,706
Number of Sequences: 237096
Number of extensions: 658468
Number of successful extensions: 1532
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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