Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b02
         (532 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029401-1|ABK57058.1|   96|Drosophila melanogaster IP02163p pro...    30   2.3  
BT023672-1|AAY85072.1|   51|Drosophila melanogaster IP04475p pro...    28   9.1  
AE013599-4023|AAM68330.1|   51|Drosophila melanogaster CG30430-P...    28   9.1  

>BT029401-1|ABK57058.1|   96|Drosophila melanogaster IP02163p
           protein.
          Length = 96

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
 Frame = +2

Query: 188 FLDRALRNLSCALARRARGPVGRGCSLCVLSRLWDRADLYCPCCSRACLYRPCSPFF--L 361
           F  +  +N+ CA      GP G  C  C             PCC   C   PC P     
Sbjct: 17  FSQKLKKNMGCAPGGPCCGPCGPCCGPCC-------GPCCGPCCGPCC--GPCGPCCGPC 67

Query: 362 GRRADPCRP 388
           G R  PC P
Sbjct: 68  GPRCGPCGP 76


>BT023672-1|AAY85072.1|   51|Drosophila melanogaster IP04475p
           protein.
          Length = 51

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 311 PCCSRACLYRPCSPFFLGRRADP-CRP*NNLVAPC 412
           PCC   C Y  CSP F GR   P C   +    PC
Sbjct: 5   PCCG-TCYYPCCSPCFSGRCFGPRCGFYSGPCGPC 38


>AE013599-4023|AAM68330.1|   51|Drosophila melanogaster CG30430-PA
           protein.
          Length = 51

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 311 PCCSRACLYRPCSPFFLGRRADP-CRP*NNLVAPC 412
           PCC   C Y  CSP F GR   P C   +    PC
Sbjct: 5   PCCG-TCYYPCCSPCFSGRCFGPRCGFYSGPCGPC 38


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,254,674
Number of Sequences: 53049
Number of extensions: 205672
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1991467008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)