Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14b02
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    28   3.6  

>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +2

Query: 104 VFLVLLIWAVVSR-QCRRVDHVNDWVVRFFLDRALRNLSCALARRARGPVGRGCSLCVLS 280
           +FL+++    +S  + + +D + +W  ++F D A   ++    R+AR P   G S     
Sbjct: 33  LFLIMMTSREISEFREQTLDDLKEW--KYFSDAAWNEMTSLTIRKARSPSTTGNSGNAGK 90

Query: 281 RLWDRA--DLYCP 313
           R W +   D Y P
Sbjct: 91  RFWAKRSYDSYAP 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,431,469
Number of Sequences: 27780
Number of extensions: 108969
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)