Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a24
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 330 6e-91
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.20
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.35
03_03_0091 - 14371528-14372661 30 1.9
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.4
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 4.3
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 4.3
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 4.3
08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167 28 5.6
04_01_0618 - 8094991-8097288 28 7.5
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 7.5
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 28 7.5
11_06_0377 - 22900042-22900452,22900527-22902236 27 9.9
09_02_0519 - 10150954-10152006 27 9.9
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 27 9.9
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 330 bits (811), Expect = 6e-91
Identities = 144/203 (70%), Positives = 174/203 (85%)
Frame = -2
Query: 654 HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLE 475
+GY+KGVV DIIHDPGRGAPLA V FR P+++K +KELF+A EG+YTGQFVYCG++ATL
Sbjct: 38 NGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLS 97
Query: 474 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 295
+GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HNPD +R+KLPSGAKK+
Sbjct: 98 IGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKI 157
Query: 294 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQ 115
+PSS R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQ
Sbjct: 158 VPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQ 217
Query: 114 HIGKASTVKRGTSAGRKVGLIAA 46
HIG ASTV+R G+KVGLIAA
Sbjct: 218 HIGHASTVRRDAPPGQKVGLIAA 240
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 256 WRWTY*QTYFESWKGIPQVQG 194
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +2
Query: 239 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 418
++ PPP +P +P R+ P G +G P A R+P +P+F S
Sbjct: 12 ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
Query: 419 RL 424
R+
Sbjct: 71 RV 72
>03_03_0091 - 14371528-14372661
Length = 377
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +2
Query: 251 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 424
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 425 HTMVPSGIAPTGITFP 472
M+ +G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 379 LWKLRHCDWT 350
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 4.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 256 WRWTY*QTYFESWKGIPQVQG 194
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +3
Query: 348 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 437
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 165 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 58
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167
Length = 214
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 149 GFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLL 283
G + P +G + ++T +L LP ++ L +R PT+PLL
Sbjct: 91 GLLRRPSRHGSRQQVTWFLETYLPGTELTLPLRYKEFPGPTLPLL 135
>04_01_0618 - 8094991-8097288
Length = 765
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 574 RSIQVQDKEGALHCSRRALHRPICLLW 494
R Q+ D++ + C+ R +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 348 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 229
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 4 LCIGLASTNPSGPASSNKTNFA-TSRCSSLDSGSLTYMLMVTTTVRMLYRVHG 159
L + +A + SG +N +FA TS CSSL S TY+L+ + V+G
Sbjct: 305 LLVNVAIVSISGTICANNLSFADTSTCSSLTLNS-TYVLLKNILGKSSSTVYG 356
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 486 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 319
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>09_02_0519 - 10150954-10152006
Length = 350
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 1 LLCIGLASTNPSGPASSNKTNFATSRCSSLDSGSLT-YMLMVTTTVRMLY-RVHG-NTTY 171
+L I L ST+P SS ++ S ++ L+ + L TT++ L+ R+HG +TT
Sbjct: 9 VLLISLLSTHPPTGVSSLSFSYDFSSQPHYNTKDLSLFYLKTTTSILDLHGRLHGDSTTT 68
Query: 172 IW 177
+W
Sbjct: 69 VW 70
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = -2
Query: 465 VMPVGAMPEG---TIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 295
V+PV +G + E RGR ARAS G N +KR R+ +P+ + +
Sbjct: 469 VVPVTHFQQGWNAPVAIGGEHLYNQRGREARASDAIVINGGDNNLSKRKRLTVPARSNSL 528
Query: 294 LPSSNRGMVGIVAGGGRIDKPI 229
+N I +G R+ PI
Sbjct: 529 --KNNMASNSIKSGSQRMWVPI 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,042,644
Number of Sequences: 37544
Number of extensions: 499654
Number of successful extensions: 1586
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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