Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a23
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...   117   2e-27
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    30   0.34 
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    29   0.46 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    29   0.80 
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          29   0.80 
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.2  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.6  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   7.4  
SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   7.4  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.8  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   9.8  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.8  

>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score =  117 bits (281), Expect = 2e-27
 Identities = 62/134 (46%), Positives = 86/134 (64%), Gaps = 5/134 (3%)
 Frame = -3

Query: 629 RGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQ-ASRSPHTGVW 453
           RGG  TFHGPGQ++AYPII+LK +  S + YV+ LE+  I  C   GI+ A  + +TGVW
Sbjct: 83  RGGQTTFHGPGQILAYPIIDLKSFGLSPREYVSRLEQAIIATCKSFGIEKAHTTKNTGVW 142

Query: 452 VADN-KIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCGIVDKGVTSLTKETG---DL 285
           V +N KIAAIG+H  R +T+HG+A+N   DL +F +I  CG+  K  TS  K+ G   DL
Sbjct: 143 VTENDKIAAIGIHLRRNITSHGLALNVSTDLKYFNYIVGCGLYGKNTTSF-KDQGVFTDL 201

Query: 284 CTIDKITPLFLSKF 243
            +++K+    L  F
Sbjct: 202 KSVEKVLVNNLDSF 215


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 476 CWLEFLS-HHTILCQFLPNYLHTTSHLVYSTSNL 574
           C L FL+  +T+LC  +P ++HT ++L ++ + +
Sbjct: 30  CALAFLTLRYTLLCYSIPIHIHTVNYLAFTIARM 63


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 431 AIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCGIVDK-GV-TSLTKE 297
           +IGV  S  V  H  A+N D  +  +K+ + CGI    G+ T+LT +
Sbjct: 307 SIGVDPSTKVIVHSDALNVDRCIELYKYCEKCGIKSAFGIGTNLTSD 353


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -3

Query: 407 YVTTHGIAINCDIDLSWFKHIDPCGIVDKGVTSLTKETGDLCTIDKITPLFLSKFQDVFE 228
           Y +T  ++ + +  L   K  +   +  +G+ +L + T D+  + KITP+  SKF ++ E
Sbjct: 46  YFSTKQLSESKEAYLDAIKIDEKAVLAWQGLWNLYESTHDISELHKITPILASKFLELEE 105


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 26  FNREIEQPLSSAVRVINYRHWAGQS**YTQSLNYFMLYFVPSIPSLIY 169
           F   + +PL +  R+  YRH A       +  N+F  Y+VPS+ ++++
Sbjct: 49  FMEYMRKPLPTTFRICGYRHHA------FELKNHFEKYYVPSLKNVVH 90


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 144 YHQFLH*FIIYITQNIFLGLQVQ-VFYLTFKHILKFTQK 257
           YH ++H +I+ +  +IF G  +  VF++++ +I+   QK
Sbjct: 433 YHPYVH-WIVPLISSIFFGWSLLFVFFVSYNYIIDSYQK 470


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 76  LPSLGWPVIIIYSIIKLFYAVFCTINSFINLLYT*LRISF 195
           LP   W   ++ +I   F  VF  +N F +L Y  L ISF
Sbjct: 149 LPVNTWRTWVLTTI---FVIVFAAVNQFFSLRYPALSISF 185


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 144 YHQFLH*FIIYITQNIFLGLQVQVFYLTFKHILKFTQKQ 260
           +HQ  H  ++   Q +FL  +  + Y   KH+L  T+ Q
Sbjct: 586 FHQQRHRVVLRDKQGVFLPSRGMLSYNHIKHVLTSTRTQ 624


>SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 219 YLTFKHILKFTQKQWCYFVYCAQISCFFGQ*C 314
           Y+T   I K  +K+W + +Y  ++S  F   C
Sbjct: 56  YITDARITKTRRKRWVFGIYPLEVSSTFPSIC 87


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 526 KLFTYHFTLGL*YFKFIIGYA 588
           KLF YHFT  + YF     YA
Sbjct: 2   KLFLYHFTFIVYYFIISFSYA 22


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 314 TSLTKETGDLCTIDKITPLFLSKFQDVFECEIEDLDLKSQKDILSYVYNKLM 159
           TS + + G+L  IDK+  + L KFQ       E   +      L+Y  N  +
Sbjct: 703 TSSSVDVGELRGIDKLALVQLDKFQTEIRELYESYSINKVVHHLNYFMNSFL 754


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 491 LSHHTILCQFLPNYLHTTSHLVYSTSNL*LGMQLID 598
           ++  T+   F P ++ +TSH V++ S+    +Q+ID
Sbjct: 230 VTRSTLTFSFYPKHVFSTSHYVFAISS--SSLQIID 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,510
Number of Sequences: 5004
Number of extensions: 65095
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)