Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a23
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0988 - 25064023-25064327,25064425-25064575,25064995-250652...   133   1e-31
03_02_0832 - 11623018-11623743                                        112   3e-25
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200...    28   5.8  
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502...    28   5.8  

>12_02_0988 -
           25064023-25064327,25064425-25064575,25064995-25065259,
           25065640-25065836
          Length = 305

 Score =  133 bits (322), Expect = 1e-31
 Identities = 71/148 (47%), Positives = 93/148 (62%), Gaps = 11/148 (7%)
 Frame = -3

Query: 629 RGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIR-LCGDLGIQASRSPH-TGV 456
           RGG VT+HGPGQLV YPIINL+Y++  + WY  SLEE+ IR L     I+ASR    TGV
Sbjct: 143 RGGEVTYHGPGQLVMYPIINLRYHQMDLHWYFRSLEEVIIRALQSAFSIKASRVEGLTGV 202

Query: 455 WVADNKIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCGIVDKGVTSLT--------- 303
           WV D K+AAIG+H SR++  HG+A+N   DL+ F+ I PCGI D+GV S+          
Sbjct: 203 WVGDKKVAAIGIHVSRWIAYHGLALNVTTDLTPFQLIVPCGIKDRGVGSIKEILQIASDG 262

Query: 302 KETGDLCTIDKITPLFLSKFQDVFECEI 219
           KE  +   IDK     L +F +VF+  +
Sbjct: 263 KEIDETALIDKAYRTLLKEFAEVFQLSL 290


>03_02_0832 - 11623018-11623743
          Length = 241

 Score =  112 bits (269), Expect = 3e-25
 Identities = 58/113 (51%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
 Frame = -3

Query: 629 RGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQA--SRSPHTGV 456
           RGG VTFHGP Q V YPI++L+      + YV  LE   I +    G+QA    +  TGV
Sbjct: 81  RGGDVTFHGPRQAVLYPILSLRAIGLGARRYVEGLESAMIEVAALYGVQACPGAAGETGV 140

Query: 455 WVADNKIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCGIVDKGVTSLTKE 297
           WV D KI AIGV  S   T HG+A N D DL +F+HI PCGI DK VTSL +E
Sbjct: 141 WVGDRKIGAIGVRISSGFTCHGLAFNIDPDLGFFEHIVPCGIADKEVTSLRRE 193


>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
            22220149-22220365,22220798-22221021,22221559-22221738,
            22221875-22222013,22222107-22222255,22223394-22223505,
            22223998-22224506,22224661-22224784,22224904-22225178,
            22225507-22225626,22225707-22225769,22225861-22226052,
            22226381-22226440,22226535-22226738,22226926-22227051,
            22227093-22227254,22227357-22227476,22227665-22227820,
            22227895-22227957,22228041-22228168,22228524-22228920,
            22229442-22229544,22229646-22229776,22230096-22230167,
            22230472-22230553,22231083-22231190,22231288-22231429,
            22231659-22231698,22231746-22231876,22232215-22232301,
            22232395-22232605,22232687-22232741,22232836-22232927,
            22233011-22233071,22233361-22233719
          Length = 2010

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 330  YTTGVYVFEPRKVNITIYCN 389
            +  G Y+ EPRK+N+T  CN
Sbjct: 1811 FVKGFYIKEPRKLNLTPSCN 1830


>09_04_0479 -
           17948043-17949037,17949554-17949715,17949809-17950262,
           17952895-17953326
          Length = 680

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 446 DNKIAAIGVHTSRYVTTHGIAINC 375
           DNKI  IG  T  Y+TT    I C
Sbjct: 126 DNKITVIGCKTLAYMTTDSYVIGC 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,319,821
Number of Sequences: 37544
Number of extensions: 367709
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)