Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a23
         (667 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084362-1|AAC33364.1|  134|Homo sapiens lipoate-protein ligase ...    65   2e-10
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen...    33   1.2  
X06269-1|CAA29605.1|  226|Homo sapiens protein ( Human mRNA for ...    33   1.2  
S64596-1|AAB27856.1|  284|Homo sapiens type I collagen pro alpha...    33   1.2  
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.                 33   1.2  
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha...    33   1.2  
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen...    33   1.2  
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ...    33   1.2  

>AF084362-1|AAC33364.1|  134|Homo sapiens lipoate-protein ligase B
           protein.
          Length = 134

 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
 Frame = -3

Query: 629 RGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQA-SRSPHTGVW 453
           RGG VT+HGPGQLVAY + +L     +V+  V   E + I L     I+A +++   GV+
Sbjct: 43  RGGQVTWHGPGQLVAYFMFDLNRLGWNVRTLVTYAENLMIHLLKKYKIEAYAKADAPGVY 102

Query: 452 VADNKIAAIGVHTSRYVTTHGIAINCDIDL 363
           VA+ KI ++G    +  + HG+A+N D DL
Sbjct: 103 VAERKIGSLGFKIRKGRSYHGLALNIDCDL 132


>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
            protein.
          Length = 1464

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 495  LRNSSQQITSHRSMGGR*QNSRNRCSHLEICHNPW 391
            L++ SQQI + RS  G  +N    C  L++CH+ W
Sbjct: 1235 LKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDW 1269


>X06269-1|CAA29605.1|  226|Homo sapiens protein ( Human mRNA for
           pro-1(I)collagen chain (Col1A1). ).
          Length = 226

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 495 LRNSSQQITSHRSMGGR*QNSRNRCSHLEICHNPW 391
           L++ SQQI + RS  G  +N    C  L++CH+ W
Sbjct: 7   LKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDW 41


>S64596-1|AAB27856.1|  284|Homo sapiens type I collagen pro alpha
           1(I) chain propeptide protein.
          Length = 284

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 495 LRNSSQQITSHRSMGGR*QNSRNRCSHLEICHNPW 391
           L++ SQQI + RS  G  +N    C  L++CH+ W
Sbjct: 57  LKSLSQQIENIRSPEGTRKNPARTCRDLKMCHSDW 91


>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
          Length = 1040

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 495 LRNSSQQITSHRSMGGR*QNSRNRCSHLEICHNPW 391
           L++ SQQI + RS  G  +N    C  L++CH+ W
Sbjct: 811 LKSLSQQIENIRSPEGXRKNPARTCRDLKMCHSDW 845


>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
            protein.
          Length = 1464

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 495  LRNSSQQITSHRSMGGR*QNSRNRCSHLEICHNPW 391
            L++ SQQI + RS  G  +N    C  L++CH+ W
Sbjct: 1235 LKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDW 1269


>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
            protein.
          Length = 1461

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 495  LRNSSQQITSHRSMGGR*QNSRNRCSHLEICHNPW 391
            L++ SQQI + RS  G  +N    C  L++CH+ W
Sbjct: 1232 LKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDW 1266


>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
            precursor variant protein.
          Length = 1467

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 495  LRNSSQQITSHRSMGGR*QNSRNRCSHLEICHNPW 391
            L++ SQQI + RS  G  +N    C  L++CH+ W
Sbjct: 1238 LKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDW 1272


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,247,447
Number of Sequences: 237096
Number of extensions: 2260772
Number of successful extensions: 7456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7455
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)