Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a23
(667 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY094675-1|AAM11028.1| 234|Drosophila melanogaster GH04831p pro... 174 8e-44
AE014297-94|AAF52124.1| 234|Drosophila melanogaster CG9804-PA p... 174 8e-44
AY118575-1|AAM49944.1| 453|Drosophila melanogaster LD43175p pro... 32 0.81
AF237613-1|AAF60328.1| 453|Drosophila melanogaster YELLOW-B pro... 32 0.81
AE014134-2765|AAF53564.1| 453|Drosophila melanogaster CG17914-P... 32 0.81
BT024359-1|ABC86421.1| 213|Drosophila melanogaster IP08110p pro... 29 5.7
AE014298-1162|AAF46359.1| 213|Drosophila melanogaster CG15343-P... 29 5.7
M59077-1|AAA28680.1| 1302|Drosophila melanogaster P-glycoprotein... 29 7.5
AY121669-1|AAM51996.1| 1302|Drosophila melanogaster RE14657p pro... 29 7.5
AF251287-1|AAF69147.1| 1302|Drosophila melanogaster P-glycoprote... 29 7.5
AF251286-1|AAF69146.1| 1302|Drosophila melanogaster P-glycoprote... 29 7.5
AE014296-1105|AAF50669.1| 1302|Drosophila melanogaster CG10181-P... 29 7.5
AY058630-1|AAL13859.1| 487|Drosophila melanogaster LD32783p pro... 28 9.9
AF025540-1|AAC14018.1| 487|Drosophila melanogaster zinc finger ... 28 9.9
AE014134-2742|AAF53549.1| 487|Drosophila melanogaster CG4694-PA... 28 9.9
>AY094675-1|AAM11028.1| 234|Drosophila melanogaster GH04831p
protein.
Length = 234
Score = 174 bits (424), Expect = 8e-44
Identities = 75/140 (53%), Positives = 102/140 (72%), Gaps = 1/140 (0%)
Frame = -3
Query: 629 RGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQASRSPH-TGVW 453
RGGL+TFHGPGQLVAYPI++L + PS++WYV +LE + + C +GI ++++ TG+W
Sbjct: 83 RGGLITFHGPGQLVAYPILHLGQFVPSIRWYVATLERMVVEACHQMGISSAKATKDTGIW 142
Query: 452 VADNKIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCGIVDKGVTSLTKETGDLCTID 273
V DNKI AIG+H SRYVTTHGI +NC DL WF+HI PCGI KGVTSL+KE ++
Sbjct: 143 VGDNKICAIGIHGSRYVTTHGIGLNCCTDLQWFEHIVPCGIEGKGVTSLSKELDRHFPVE 202
Query: 272 KITPLFLSKFQDVFECEIED 213
+ + L+ F VFEC +++
Sbjct: 203 EASGALLNSFAKVFECRLQE 222
>AE014297-94|AAF52124.1| 234|Drosophila melanogaster CG9804-PA
protein.
Length = 234
Score = 174 bits (424), Expect = 8e-44
Identities = 75/140 (53%), Positives = 102/140 (72%), Gaps = 1/140 (0%)
Frame = -3
Query: 629 RGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQASRSPH-TGVW 453
RGGL+TFHGPGQLVAYPI++L + PS++WYV +LE + + C +GI ++++ TG+W
Sbjct: 83 RGGLITFHGPGQLVAYPILHLGQFVPSIRWYVATLERMVVEACHQMGISSAKATKDTGIW 142
Query: 452 VADNKIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCGIVDKGVTSLTKETGDLCTID 273
V DNKI AIG+H SRYVTTHGI +NC DL WF+HI PCGI KGVTSL+KE ++
Sbjct: 143 VGDNKICAIGIHGSRYVTTHGIGLNCCTDLQWFEHIVPCGIEGKGVTSLSKELDRHFPVE 202
Query: 272 KITPLFLSKFQDVFECEIED 213
+ + L+ F VFEC +++
Sbjct: 203 EASGALLNSFAKVFECRLQE 222
>AY118575-1|AAM49944.1| 453|Drosophila melanogaster LD43175p
protein.
Length = 453
Score = 31.9 bits (69), Expect = 0.81
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = -3
Query: 557 KPSVKWYVNSLEEIGIRLCGDLGIQASRSPHTGVWVADNKIAAIGVHTSRYVTTHGIAIN 378
KP W ++L+E L ++A R +WV D++I+ + T Y + +
Sbjct: 98 KPFPSWQAHNLQEAEPELVSPFRVRADRCGR--LWVLDSRISGVLEQTKIYGAAQLLVYD 155
Query: 377 CDIDLSWFKHIDPCGIVDKG--VTSLTKETGD 288
D +H+ P G + +G + +L E D
Sbjct: 156 LHNDDLLRRHVLPAGQLKQGSLLANLAVEDSD 187
>AF237613-1|AAF60328.1| 453|Drosophila melanogaster YELLOW-B
protein.
Length = 453
Score = 31.9 bits (69), Expect = 0.81
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = -3
Query: 557 KPSVKWYVNSLEEIGIRLCGDLGIQASRSPHTGVWVADNKIAAIGVHTSRYVTTHGIAIN 378
KP W ++L+E L ++A R +WV D++I+ + T Y + +
Sbjct: 98 KPFPSWQAHNLQEAEPELVSPFRVRADRCGR--LWVLDSRISGVLEQTKIYGAAQLLVYD 155
Query: 377 CDIDLSWFKHIDPCGIVDKG--VTSLTKETGD 288
D +H+ P G + +G + +L E D
Sbjct: 156 LHNDDLLRRHVLPAGQLKQGSLLANLAVEDSD 187
>AE014134-2765|AAF53564.1| 453|Drosophila melanogaster CG17914-PA
protein.
Length = 453
Score = 31.9 bits (69), Expect = 0.81
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = -3
Query: 557 KPSVKWYVNSLEEIGIRLCGDLGIQASRSPHTGVWVADNKIAAIGVHTSRYVTTHGIAIN 378
KP W ++L+E L ++A R +WV D++I+ + T Y + +
Sbjct: 98 KPFPSWQAHNLQEAEPELVSPFRVRADRCGR--LWVLDSRISGVLEQTKIYGAAQLLVYD 155
Query: 377 CDIDLSWFKHIDPCGIVDKG--VTSLTKETGD 288
D +H+ P G + +G + +L E D
Sbjct: 156 LHNDDLLRRHVLPAGQLKQGSLLANLAVEDSD 187
>BT024359-1|ABC86421.1| 213|Drosophila melanogaster IP08110p
protein.
Length = 213
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -3
Query: 593 LVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQASRSPHTGVWVADNKIAAIGVH 417
L A P + +Y P VK + +RL G ++ +S +W +N A I H
Sbjct: 79 LQANPKACITFYMPDVKDKAGNQNAWQVRLIGATAVELDQSEMDALWAKENLAAQIRGH 137
>AE014298-1162|AAF46359.1| 213|Drosophila melanogaster CG15343-PA
protein.
Length = 213
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -3
Query: 593 LVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQASRSPHTGVWVADNKIAAIGVH 417
L A P + +Y P VK + +RL G ++ +S +W +N A I H
Sbjct: 79 LQANPKACITFYMPDVKDKAGNQNAWQVRLIGATAVELDQSEMDALWAKENLAAQIRGH 137
>M59077-1|AAA28680.1| 1302|Drosophila melanogaster P-glycoprotein
protein.
Length = 1302
Score = 28.7 bits (61), Expect = 7.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 216 FYLTFKHILKFTQKQWCYFV 275
F+ TF IL+ +++WCY +
Sbjct: 714 FFRTFSRILQLAKQEWCYLI 733
>AY121669-1|AAM51996.1| 1302|Drosophila melanogaster RE14657p
protein.
Length = 1302
Score = 28.7 bits (61), Expect = 7.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 216 FYLTFKHILKFTQKQWCYFV 275
F+ TF IL+ +++WCY +
Sbjct: 714 FFRTFSRILQLAKQEWCYLI 733
>AF251287-1|AAF69147.1| 1302|Drosophila melanogaster P-glycoprotein
protein.
Length = 1302
Score = 28.7 bits (61), Expect = 7.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 216 FYLTFKHILKFTQKQWCYFV 275
F+ TF IL+ +++WCY +
Sbjct: 714 FFRTFSRILQLAKQEWCYLI 733
>AF251286-1|AAF69146.1| 1302|Drosophila melanogaster P-glycoprotein
protein.
Length = 1302
Score = 28.7 bits (61), Expect = 7.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 216 FYLTFKHILKFTQKQWCYFV 275
F+ TF IL+ +++WCY +
Sbjct: 714 FFRTFSRILQLAKQEWCYLI 733
>AE014296-1105|AAF50669.1| 1302|Drosophila melanogaster CG10181-PA
protein.
Length = 1302
Score = 28.7 bits (61), Expect = 7.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 216 FYLTFKHILKFTQKQWCYFV 275
F+ TF IL+ +++WCY +
Sbjct: 714 FFRTFSRILQLAKQEWCYLI 733
>AY058630-1|AAL13859.1| 487|Drosophila melanogaster LD32783p
protein.
Length = 487
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 395 HGIAINCDIDLSWFKHIDP 339
H IA+N D L WF+ IDP
Sbjct: 287 HVIAVNVDGQLRWFQSIDP 305
>AF025540-1|AAC14018.1| 487|Drosophila melanogaster zinc finger
protein HER protein.
Length = 487
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 395 HGIAINCDIDLSWFKHIDP 339
H IA+N D L WF+ IDP
Sbjct: 287 HVIAVNVDGQLRWFQSIDP 305
>AE014134-2742|AAF53549.1| 487|Drosophila melanogaster CG4694-PA
protein.
Length = 487
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 395 HGIAINCDIDLSWFKHIDP 339
H IA+N D L WF+ IDP
Sbjct: 287 HVIAVNVDGQLRWFQSIDP 305
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,856,968
Number of Sequences: 53049
Number of extensions: 660762
Number of successful extensions: 1354
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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