Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a23
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68270-8|CAC35869.1| 309|Caenorhabditis elegans Hypothetical pr... 115 3e-26
Z68270-9|CAE54911.1| 307|Caenorhabditis elegans Hypothetical pr... 111 3e-25
U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z98853-2|CAB57902.2| 371|Caenorhabditis elegans Hypothetical pr... 27 9.1
U61953-4|AAC48076.1| 326|Caenorhabditis elegans Hypothetical pr... 27 9.1
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 27 9.1
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 27 9.1
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 27 9.1
>Z68270-8|CAC35869.1| 309|Caenorhabditis elegans Hypothetical
protein ZC410.7b protein.
Length = 309
Score = 115 bits (276), Expect = 3e-26
Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 1/140 (0%)
Frame = -3
Query: 629 RGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQASRSPHTGVWV 450
RGGL+TFHGPGQLV YPI +++ + S+K + E GI+ G R+ +TGVWV
Sbjct: 161 RGGLITFHGPGQLVLYPICDVR--RISIKQLDAATEGFGIKNVG-------RTANTGVWV 211
Query: 449 A-DNKIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCGIVDKGVTSLTKETGDLCTID 273
+ + K+AAIG+ S V+ HGIAINC+ DL WF +I CGI TSL++ET T+
Sbjct: 212 SNERKLAAIGIAVSGGVSYHGIAINCNTDLRWFDNIVGCGIEGVSTTSLSQETSRNVTVS 271
Query: 272 KITPLFLSKFQDVFECEIED 213
P+ L+ F + FEC + +
Sbjct: 272 DARPILLNAFANNFECLLNE 291
>Z68270-9|CAE54911.1| 307|Caenorhabditis elegans Hypothetical
protein ZC410.7c protein.
Length = 307
Score = 111 bits (268), Expect = 3e-25
Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Frame = -3
Query: 629 RGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQASRSPHTGVWV 450
RGGL+TFHGPGQLV YPI +++ + S+K E GI+ G R+ +TGVWV
Sbjct: 161 RGGLITFHGPGQLVLYPICDVR--RISIKQLAT--EGFGIKNVG-------RTANTGVWV 209
Query: 449 A-DNKIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCGIVDKGVTSLTKETGDLCTID 273
+ + K+AAIG+ S V+ HGIAINC+ DL WF +I CGI TSL++ET T+
Sbjct: 210 SNERKLAAIGIAVSGGVSYHGIAINCNTDLRWFDNIVGCGIEGVSTTSLSQETSRNVTVS 269
Query: 272 KITPLFLSKFQDVFECEIED 213
P+ L+ F + FEC + +
Sbjct: 270 DARPILLNAFANNFECLLNE 289
>U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical
protein C52B9.4 protein.
Length = 558
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 76 LPSLGWPVIIIYSIIKLFYAVFCTINSFINLLY--T*LRISFW 198
L ++ WP++ Y I+ +FY+ I + + Y LRI +W
Sbjct: 208 LSAIDWPLLRFYKIMCVFYSALALIWVYCCIKYYRDILRIQYW 250
>Z98853-2|CAB57902.2| 371|Caenorhabditis elegans Hypothetical
protein R08A2.2 protein.
Length = 371
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 578 LGMQLIDQAHEKLQDRLXFXFXKSAPRLFS 667
LG+ LI +AHE Q+ F F K +FS
Sbjct: 249 LGLSLIVRAHEVSQEGFNFLFNKKCVTVFS 278
>U61953-4|AAC48076.1| 326|Caenorhabditis elegans Hypothetical
protein R08C7.8 protein.
Length = 326
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 578 LGMQLIDQAHEKLQDRLXFXFXKSAPRLFS 667
LG+ LI +AHE Q+ F F K +FS
Sbjct: 204 LGLSLIVRAHEVSQEGFNFLFNKKCVTVFS 233
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 344 DPCGIVDKGVTSLTKETGDLCTIDK---ITPLFLSKFQDVFECEIEDLDLKS 198
D C V VT+LT CTI K I PL L +F+ E IE + L +
Sbjct: 173 DDCASVISTVTTLTALESSACTILKTSVIRPLGLKEFELQSEDMIESVKLSN 224
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 344 DPCGIVDKGVTSLTKETGDLCTIDK---ITPLFLSKFQDVFECEIEDLDLKS 198
D C V VT+LT CTI K I PL L +F+ E IE + L +
Sbjct: 173 DDCASVISTVTTLTALESSACTILKTSVIRPLGLKEFELQSEDMIESVKLSN 224
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 344 DPCGIVDKGVTSLTKETGDLCTIDK---ITPLFLSKFQDVFECEIEDLDLKS 198
D C V VT+LT CTI K I PL L +F+ E IE + L +
Sbjct: 221 DDCASVISTVTTLTALESSACTILKTSVIRPLGLKEFELQSEDMIESVKLSN 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,743,017
Number of Sequences: 27780
Number of extensions: 357265
Number of successful extensions: 856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -