Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a23
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.0  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   6.0  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        22   6.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 97  VIIIYSIIKLFYAVFCTINSFIN-LLY 174
           +IIIY+I+     VF  +++ +N LLY
Sbjct: 322 LIIIYTILTYMSGVFYYLSTTVNPLLY 348


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 215 DLDLKSQKDILSYVYNKLMKELM 147
           D+ LKS K I  +   K +KE+M
Sbjct: 111 DIHLKSSKLIKCFAKYKTLKEIM 133


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 161 LIYYIHNSEYLFGTSS 208
           +++Y+H   ++ GTSS
Sbjct: 20  VMFYVHEGAFISGTSS 35


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +2

Query: 476 CWLEFLSHHTIL 511
           CWL+   HH  +
Sbjct: 121 CWLQMTKHHNFI 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,177
Number of Sequences: 438
Number of extensions: 4588
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)