Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a21
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 238 6e-64
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 89 4e-19
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 71 2e-13
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 40 3e-04
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 1.8
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 5.5
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 5.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 5.5
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 9.6
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 25 9.6
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 238 bits (582), Expect = 6e-64
Identities = 107/187 (57%), Positives = 143/187 (76%)
Frame = -2
Query: 648 IQFDHGTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVY 469
I+ +HGTTTL FRY+ G+++ VDSRA+ G I SQ++KK++EIN YLLGTLAGGAADC +
Sbjct: 56 IKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQF 115
Query: 468 WDRVLAKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQLYYV 289
W+ VL +CRL++LRN+E ISV+AASK+++N+ Y+YK G K G LYY+
Sbjct: 116 WETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYI 175
Query: 288 DSEGTRTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGII 109
DS+GTR G +FSVGSGS +A+GVLDSGY WDLS ++A L +R+I ATHRDAYSGG +
Sbjct: 176 DSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSV 235
Query: 108 RVYHIND 88
+YHI++
Sbjct: 236 NLYHIDE 242
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 89.4 bits (212), Expect = 4e-19
Identities = 54/181 (29%), Positives = 86/181 (47%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
GTT RYK GV+LA DSR T G +I ++ K+ ++ D + +G AAD +L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 453 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQLYYVDSEGT 274
+Y ++ SV A+ L + M Y K +K G +Y + G+
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143
Query: 273 RTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGIIRVYHI 94
+ GSGS + +G D+ + +++ E+A E + A+ A RD SGG IR+ +
Sbjct: 144 LHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVIL 203
Query: 93 N 91
N
Sbjct: 204 N 204
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 70.5 bits (165), Expect = 2e-13
Identities = 48/172 (27%), Positives = 80/172 (46%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
GTT +G K ++L D+RAT G I ++ KK+ I+ + AG AAD + ++
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMI 94
Query: 453 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQLYYVDSEGT 274
+ L+ L + V A ++ ++ Y+ G D +G L+ + + G+
Sbjct: 95 SSNIELHSLYTNRKPRVVTALTMLKQHLFRYQ-GHIGAYLVLGGYDCKGPHLFTIAAHGS 153
Query: 273 RTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSG 118
++GSGS+ A VL++ Y DL +A EL + AI D SG
Sbjct: 154 SDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSG 205
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 39.9 bits (89), Expect = 3e-04
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
G+T +G + K V+L V+ R T + S S++K+ EI+ ++ ++G AD
Sbjct: 34 GSTAIGVKTKDAVVLGVEKRLTS-PLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHA 92
Query: 453 AKQCRLYELRNRERISVAAASKLMANMVYNY----------KXXXXXXXXXXXGIDKRGA 304
Q + + E + + ++ + ++ + GID+ G
Sbjct: 93 RVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGP 152
Query: 303 QLYYVDSEGTRTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQEL 166
QLY+ + GT + ++GSGS A L + D++ E+A+ L
Sbjct: 153 QLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVL 198
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 254 SQWAQVLCMLLVYLTLDTAGICQMR 180
SQ +LC LVY T + G+C M+
Sbjct: 53 SQLENILCFFLVYRTTYSFGVCLMK 77
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 406 RNTLPIPKLIETALLCEYSVPVDTVCCTTSESTKQIV 516
+N +PKL+E S P V CTTSES + IV
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPC--VLCTTSESGEHIV 530
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Frame = +3
Query: 159 VDPALVRPHLTDPSCIQSQVHQKHTQN----LSPLRTPCLECEY 278
V P L T+P + HTQ L L CL CEY
Sbjct: 136 VQPRLYTNSSTNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEY 179
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 406 RNTLPIPKLIETALLCEYSVPVDTVCCTTSESTKQIV 516
+N +PKL+E S P V CTTSES + IV
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPC--VLCTTSESGEHIV 530
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +3
Query: 387 VYWLLLQKYAPYSEAHRDGIALRVLCPSRHSLLHHQREYQANSR*FLLFSSWIE 548
+ W ++KY+ +EA + G A +V ++S + H ++ S +L S W++
Sbjct: 447 IVWSRIKKYSAIAEAKKKGFARKVK-RIKYSKISHPTYTESVSFLWLDSSLWLD 499
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 403 YRNTLPIPKLIETALLCEYSVP 468
Y ++LP P L + L CE S P
Sbjct: 271 YLSSLPTPHLADLILFCEKSYP 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,641
Number of Sequences: 5004
Number of extensions: 52037
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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