Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a21
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 137 6e-33
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 84 1e-16
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 83 2e-16
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 63 2e-10
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 50 2e-06
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 45 5e-05
01_01_0139 + 1263356-1264273 31 0.61
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 31 0.81
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 29 3.3
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831 28 7.5
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 28 7.5
02_02_0402 - 9852407-9853519 28 7.5
05_01_0137 + 917533-917814,918080-918352 27 9.9
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 27 9.9
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 137 bits (332), Expect = 6e-33
Identities = 66/120 (55%), Positives = 84/120 (70%)
Frame = -2
Query: 453 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQLYYVDSEGT 274
A QCRL+EL N+ RIS+A ASKL+AN++Y+Y+ G D++G LYYVDSEG
Sbjct: 66 AFQCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLYYVDSEGA 125
Query: 273 RTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGIIRVYHI 94
R G FSVGSGS+YA+G+LD GY + + E+A EL RRAIY AT RD SGG + VYH+
Sbjct: 126 RLMGSRFSVGSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATFRDGASGGCVSVYHV 185
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 83 GWVNISNEDCSDLHYKY 33
GW +S +D +LHYKY
Sbjct: 189 GWTKLSGDDVGELHYKY 205
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 83.8 bits (198), Expect = 1e-16
Identities = 51/181 (28%), Positives = 85/181 (46%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
GTT +G Y GGV+LA DSR + G ++ +++ KI ++ D + +G AAD +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYV 84
Query: 453 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQLYYVDSEGT 274
+ ++ + +V A+ L+ + Y K G Q++ V GT
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGT 144
Query: 273 RTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGIIRVYHI 94
GSGS Y +G+LD + +S E+A++ + + A RD SGG++R I
Sbjct: 145 ILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTI 204
Query: 93 N 91
N
Sbjct: 205 N 205
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 82.6 bits (195), Expect = 2e-16
Identities = 51/181 (28%), Positives = 85/181 (46%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
GTT +G Y GGV+LA DSR + G ++ +++ KI ++ D + +G AAD +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYV 84
Query: 453 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQLYYVDSEGT 274
+ ++ + +V A+ L+ + Y K G Q++ V GT
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGT 144
Query: 273 RTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGIIRVYHI 94
GSGS Y +G+LD + +S E+A++ + + A RD SGG++R I
Sbjct: 145 ILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTI 204
Query: 93 N 91
N
Sbjct: 205 N 205
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 63.3 bits (147), Expect = 2e-10
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 2/179 (1%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKI--VEINDYLLGTLAGGAADCVYWDR 460
GTT +G ++ GV+L D+RAT G + ++ +KI + N Y G AG AAD
Sbjct: 38 GTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCG--AGTAADTEAVTD 95
Query: 459 VLAKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQLYYVDSE 280
+++ Q +L+ V + L+ + +++Y+ G+D G L+ V
Sbjct: 96 MVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQ-GHVSAALVLGGVDVTGPHLHTVYPH 154
Query: 279 GTRTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGIIRV 103
G+ ++GSGS+ A V +S Y L+ E+ +L AI D SG + V
Sbjct: 155 GSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDV 213
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 50.0 bits (114), Expect = 2e-06
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
G+T +G + K GV+LAV+ R T + S++KI+EI++++ ++G AD R L
Sbjct: 47 GSTAIGLKTKDGVVLAVEKRVTS-PLLEPSSVEKIMEIDEHIGCAMSGLIADA----RTL 101
Query: 453 AKQCRLYELRNR----ERISVAAASKLMANMVYNYKXXXXXXXXXXXGI-------DKRG 307
+ R+ +R E ++V + ++ + ++ + G+ D+ G
Sbjct: 102 VEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDENG 161
Query: 306 AQLYYVDSEGTRTPGKVFSVGSGSVYAFGVLDSGYSWDLS 187
LYY D GT ++GSGS A L Y+ L+
Sbjct: 162 PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKSLT 201
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 45.2 bits (102), Expect = 5e-05
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 2/150 (1%)
Frame = -2
Query: 594 LLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNRE 415
++A D+ A + K++ ++ + L +G D V + + K LY+ RN
Sbjct: 14 VVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNI 73
Query: 414 RISVAAASKLM-ANMVYNYKXXXXXXXXXXXGIDKR-GAQLYYVDSEGTRTPGKVFSVGS 241
+S AA + + + G D GA LYY+D T + + G
Sbjct: 74 PLSTAATANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIATFHKIEKGAFGY 133
Query: 240 GSVYAFGVLDSGYSWDLSDEDAQELGRRAI 151
GS + ++D Y D+S E+A +L + I
Sbjct: 134 GSYFCLSLMDKLYRPDMSVEEAVDLVDKCI 163
>01_01_0139 + 1263356-1264273
Length = 305
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -1
Query: 181 GRTRA---GSTCDLPRYSP-RRVLWRDHKSVPHQRSRVGSTSPTRIAPTSTTSTKQRRA 17
G TRA S P +P R R S P +R+ G+TSPT + T++ + RRA
Sbjct: 87 GATRAKASASASSTPALAPWRPSSRRPRSSAPTRRTAAGATSPTTPSTTTSARARTRRA 145
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 31.1 bits (67), Expect = 0.81
Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 7/178 (3%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
G++ + +YK GV++A D+ A+ G + +S+++I + + L +G +D R L
Sbjct: 369 GSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSDFQEILRYL 428
Query: 453 AKQCRLYEL-RNRERISVAAASKLMANMVYN--YKXXXXXXXXXXXGIDK--RGAQLY-- 295
+ + + + + ++YN K G+ K +G + Y
Sbjct: 429 DELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKKGPKGEEKYLG 488
Query: 294 YVDSEGTRTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYS 121
V+ GT + G G+ A +L + + D++ E+A +L + + +RD S
Sbjct: 489 MVNMIGTHFEENHIATGFGNHMAIPILRTEWREDMTFEEAVKLVEKCLLVLLYRDRSS 546
>06_03_0723 +
23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 270 TPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGIIR 106
+P FS G+G V+ +D G +DL+ +D Y+AT ++G R
Sbjct: 628 SPATPFSCGAGHVFPHRAMDPGLVYDLTVDDHLSFLCTIGYNATALALFNGAPFR 682
>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
Length = 512
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 198 SCIQSQVHQKHTQNLSPLRTPCLECEY 278
SC+ S +K N P+R P L C+Y
Sbjct: 222 SCLTSYTQEKLQTNKVPIRCPQLRCKY 248
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = -2
Query: 624 TLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQ 445
+LG K VL+ TG + ++ + + V+ + +L T AA +R+
Sbjct: 481 SLGLNKKRPVLIIQGPPGTGKTVLLTELIVRAVQQGENVLVTAPSNAAVDNMVERLSNTG 540
Query: 444 CRLYELRNRERISVAAASKLMANMV 370
+ + N RIS + ASK +A +V
Sbjct: 541 LNIVRVGNPARISPSVASKSLAEIV 565
>02_02_0402 - 9852407-9853519
Length = 370
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +3
Query: 408 KYAPYSEAHR--DGIALRVLCPSRHS 479
+YA E HR DG+ LRV+ PSRHS
Sbjct: 323 EYAVSPECHRGEDGV-LRVIAPSRHS 347
>05_01_0137 + 917533-917814,918080-918352
Length = 184
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 121 WRDHKSVPHQRSRVGSTSPTRIAPTSTTST 32
+++HK+ Q + S SPT +P TT+T
Sbjct: 36 FQNHKARDRQNAAAASASPTTSSPAPTTTT 65
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 408 KYAPYSEAHRDGIALR-VLCPSRHSLLHHQREYQANS 515
+ P + ++DG+ ++ ++CPS H L + R Y +S
Sbjct: 655 RIVPTFKIYKDGVKVKEMICPSLHVLRYSVRHYAVSS 691
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,534,009
Number of Sequences: 37544
Number of extensions: 388043
Number of successful extensions: 1080
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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