Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a21
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 193 8e-50
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 96 2e-20
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 85 6e-17
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 49 3e-06
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 36 0.019
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 33 0.24
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 28 5.1
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 28 6.7
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 28 6.7
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 28 6.7
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 193 bits (471), Expect = 8e-50
Identities = 95/192 (49%), Positives = 134/192 (69%), Gaps = 7/192 (3%)
Frame = -2
Query: 648 IQFDHGTTTLGFRY-------KGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAG 490
+QF GTTTL F Y KGG+++AVDSRA+ G++I S+S+ KI++I D ++ T+AG
Sbjct: 59 MQFRKGTTTLAFVYEPATPADKGGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAG 118
Query: 489 GAADCVYWDRVLAKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKR 310
GAADC +W R++AK C LYELR + I+V+AASK AN +Y Y+ G DK+
Sbjct: 119 GAADCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKK 178
Query: 309 GAQLYYVDSEGTRTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRD 130
G Q++ VDSEG R KV SVGSGS+ A+G+LD+ Y ++D++A++LG RAI HAT+RD
Sbjct: 179 GPQIFKVDSEGDRCQLKVCSVGSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRD 238
Query: 129 AYSGGIIRVYHI 94
+ SGG+ + HI
Sbjct: 239 SGSGGVCNLCHI 250
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 95.9 bits (228), Expect = 2e-20
Identities = 52/181 (28%), Positives = 93/181 (51%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
GTT + Y GGV++ DSR + G FI S++ KI I D ++ +G AAD +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 453 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQLYYVDSEGT 274
+Y + + +++ +S++ +YNY+ ++ G Q+Y + G
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIPIGGF 142
Query: 273 RTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGIIRVYHI 94
+ + + GSGS + G LDS + +L+ E+ + + ++A+ AT RD SGG++R+ I
Sbjct: 143 VSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSSGGVVRLAVI 202
Query: 93 N 91
N
Sbjct: 203 N 203
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 84.6 bits (200), Expect = 6e-17
Identities = 50/177 (28%), Positives = 86/177 (48%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
GTT + +KGG+++ DSRAT G I + +K+ ++ + + AG AAD ++L
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKML 105
Query: 453 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQLYYVDSEGT 274
+ RL EL + V A + ++NY+ G+D G LY + GT
Sbjct: 106 SGNLRLLELNTGRKARVITALRQAKQHLFNYQ-GYIGAYLLIGGVDPTGPHLYMCSANGT 164
Query: 273 RTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGIIRV 103
+ GSGS A +L+ + D++ ++A++L +RA+ H D SG + +
Sbjct: 165 TMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQRALEAGMHGDNASGNSLNL 221
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 48.8 bits (111), Expect = 3e-06
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 3/171 (1%)
Frame = -2
Query: 597 VLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADC-VYWDRVLAKQCRLYELRN 421
V +A D R + KK+ ++ D + LAG +D ++++ ++ LYELR
Sbjct: 20 VCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRK-NLYELRE 78
Query: 420 RERISVAAASKLMANMVYNYKXXXXXXXXXXXGIDKRGAQ-LYYVDSEG-TRTPGKVFSV 247
I S++++N+ Y ++ G+D + +D+ G P +V
Sbjct: 79 NRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAV 138
Query: 246 GSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIYHATHRDAYSGGIIRVYHI 94
G+G Y GV ++ + ++ ++ E ++I RDA SG VY I
Sbjct: 139 GTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAVVYTI 189
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADC-VYWDRV 457
G+T++G + GVLLA + R+T + + + +++KI +++ ++ T AG AD +R
Sbjct: 34 GSTSIGIKTSEGVLLAAEKRST-SKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERA 92
Query: 456 LAKQCRLYELRNRERISVAAASKLMANMVYNY--------KXXXXXXXXXXXGIDKRGAQ 301
+ + NR +I V ++ +AN+ + G+D+ GA+
Sbjct: 93 QIEAQNFWFTYNR-KIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQEGAK 151
Query: 300 LYYVDSEGTRTPGKVFSVGSGS 235
L+++D GT K S+G+ S
Sbjct: 152 LFHLDPSGTFIDCKAKSIGAAS 173
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADC-VYWDRV 457
G+T +G R K +++ V+ ++ ++++KI I+D+++ AG +AD V DR
Sbjct: 30 GSTAVGVRGKDCIVIGVEKKSIPA-LQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRA 88
Query: 456 LAKQCRLYELRNRERISVAAASKLMAN 376
+C+ Y+L + ++VA S+ +AN
Sbjct: 89 RI-ECQSYKLTLEDPVTVAYISRYIAN 114
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/89 (23%), Positives = 45/89 (50%)
Frame = -2
Query: 633 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 454
GT+ + +YK GV++ D + G+ +++ + ++ND +L G AD + V+
Sbjct: 17 GTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWLQNVI 76
Query: 453 AKQCRLYELRNRERISVAAASKLMANMVY 367
+Q L++ R + I A + +++Y
Sbjct: 77 ERQVLLWK-RFDQDIGPKALHGYLTSLLY 104
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 32.7 bits (71), Expect = 0.24
Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 5/168 (2%)
Frame = -2
Query: 636 HGTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRV 457
H T LG G+++A + + S +K+ ++D + T+AG AD
Sbjct: 30 HAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINH 89
Query: 456 LAKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXGI----DKR-GAQLYY 292
L Y E + V + + N Y + DK G QLY
Sbjct: 90 LRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQ 149
Query: 291 VDSEGTRTPGKVFSVGSGSVYAFGVLDSGYSWDLSDEDAQELGRRAIY 148
D G T K +GS A +L Y + E+A++L + ++
Sbjct: 150 SDPSGNYTGWKATCIGSNHQAAVTLLKQEYK-SPNLEEAKQLAIKVLW 196
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 361 QRNGPQHGNDVSWY*QERSTTILCRQ*RYSHSRQGVLSGLRFCVC 227
+ G +DVS+ R+ I+C SH+R GVL R C+C
Sbjct: 5 EEQGGGEQDDVSFL---RTGDIVCLSCVASHNRDGVLGSERVCLC 46
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -1
Query: 100 PHQRSRVGSTSPTRIAPTSTTSTKQRR 20
P R+ +GST+PT ++ +S++ST +R
Sbjct: 643 PFIRTVIGSTAPTSVSSSSSSSTPGKR 669
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -1
Query: 100 PHQRSRVGSTSPTRIAPTSTTSTKQRR 20
P R+ +GST+PT ++ +S++ST +R
Sbjct: 643 PFIRTVIGSTAPTSVSSSSSSSTPGKR 669
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -1
Query: 100 PHQRSRVGSTSPTRIAPTSTTSTKQRR 20
P R+ +GST+PT ++ +S++ST +R
Sbjct: 643 PFIRTVIGSTAPTSVSSSSSSSTPGKR 669
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,990,769
Number of Sequences: 27780
Number of extensions: 306797
Number of successful extensions: 901
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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