Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a20
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.38 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 363 YLIPSIFMFSYILNLLWTSTNNSRPKLAKSV 271
           Y+IP++ M    L +LW  + ++   +A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 662 QARRPLYQV*RCTAITSHRILLQLRTTLSRYTSPMKIMLFGEN 534
           +A  PL Q+    A+   R++ QL+ T S+Y     + L G N
Sbjct: 171 KASAPLQQL----ALQQQRLIQQLQITQSQYLLQQGLGLQGHN 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,827
Number of Sequences: 438
Number of extensions: 3539
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)